RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 FAM209BQ5JX69 171 aa9.34□□□□□ -0.91
PTPRF-208ENST00000437607 EIF5AL1Q6IS14 154 aaKnown RBP9.34□□□□□ -0.91
PTPRF-208ENST00000437607 LCNL1Q6ZST4 164 aa9.34□□□□□ -0.91
PTPRF-208ENST00000437607 BAP18Q8IXM2 172 aa9.34□□□□□ -0.91
PTPRF-208ENST00000437607 ZNF502Q8TBZ5 544 aa9.34□□□□□ -0.91
PTPRF-208ENST00000437607 GNPNAT1Q96EK6 184 aaPredicted RBP9.34□□□□□ -0.91
PTPRF-208ENST00000437607 NPCDR1Q9BY65 106 aa9.34□□□□□ -0.91
PTPRF-208ENST00000437607 CCL24O00175 119 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 CLN5O75503 358 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 IGHV3-23P01764 117 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 ATP6V0CP27449 155 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 GPR183P32249 361 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 CAMLGP49069 296 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 RAB9AP51151 201 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 THAP8Q8NA92 274 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 CCDC140Q96MF4 163 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 MGST2Q99735 147 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 TXN2Q99757 166 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 GINS3Q9BRX5 216 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 RSG1Q9BU20 258 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 GGTLC1Q9BX51 225 aa9.33□□□□□ -0.92
PTPRF-208ENST00000437607 MRPL36Q9P0J6 103 aaKnown RBP9.33□□□□□ -0.92
PTPRF-208ENST00000437607 TRAV30A0A087WSZ9 112 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 OR2T8A6NH00 312 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 AGPAT2O15120 278 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 NUPL2O15504 423 aaKnown RBP9.32□□□□□ -0.92
PTPRF-208ENST00000437607 IGHV3-11P01762 117 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 IGLC1P0CG04 106 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 FCGR2BP31994 310 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-208ENST00000437607 MLANAQ16655 118 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 CYP2G1PQ6ZSU1 146 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 RNF152Q8N8N0 203 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 PHYHIPLQ96FC7 376 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 ATP6V0BQ99437 205 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 TRGV9Q99603 122 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 ASCL2Q99929 193 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 PSMG3Q9BT73 122 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-208ENST00000437607 SH3BGRL3Q9H299 93 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 KLK15Q9H2R5 256 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 GNB4Q9HAV0 340 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 TIMM9Q9Y5J7 89 aa9.32□□□□□ -0.92
PTPRF-208ENST00000437607 PLECQ15149 4684 aaKnown RBP9.32□□□□□ -0.92
PTPRF-208ENST00000437607 BIRC6Q9NR09 4857 aa9.31□□□□□ -0.92
PTPRF-208ENST00000437607 IFNA7P01567 189 aa9.31□□□□□ -0.92
PTPRF-208ENST00000437607 CDX1P47902 265 aaPredicted RBP9.31□□□□□ -0.92
PTPRF-208ENST00000437607 ELLP55199 621 aaPredicted RBP9.31□□□□□ -0.92
PTPRF-208ENST00000437607 B2MP61769 119 aa9.31□□□□□ -0.92
PTPRF-208ENST00000437607 SELENOTP62341 195 aa9.31□□□□□ -0.92
PTPRF-208ENST00000437607 CLEC19AQ6UXS0 136 aa9.31□□□□□ -0.92
PTPRF-208ENST00000437607 OR2G3Q8NGZ4 309 aa9.31□□□□□ -0.92
PTPRF-208ENST00000437607 MYOZ3Q8TDC0 251 aa9.31□□□□□ -0.92
PTPRF-208ENST00000437607 TMED6Q8WW62 240 aa9.31□□□□□ -0.92
PTPRF-208ENST00000437607 ARV1Q9H2C2 271 aa9.31□□□□□ -0.92
PTPRF-208ENST00000437607 SLC25A32Q9H2D1 315 aa9.31□□□□□ -0.92
PTPRF-208ENST00000437607 ZMAT5Q9UDW3 170 aaKnown RBP9.31□□□□□ -0.92
PTPRF-208ENST00000437607 PXMP4Q9Y6I8 212 aa9.31□□□□□ -0.92
PTPRF-208ENST00000437607 IGKV1D-37A0A075B6S9 117 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 IGKV1OR2-108A0A075B7D4 117 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.3□□□□□ -0.92
PTPRF-208ENST00000437607 C3orf84H3BNL1 204 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 TGOLN2O43493 480 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 LGALS1P09382 135 aaKnown RBP9.3□□□□□ -0.92
PTPRF-208ENST00000437607 SEC11BP0C7V7 166 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 SPP1P10451 314 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 ARL3P36405 182 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 RELQ04864 619 aaPredicted RBP9.3□□□□□ -0.92
PTPRF-208ENST00000437607 ZNF616Q08AN1 781 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 FHL3Q13643 280 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 TIGITQ495A1 244 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 FFAR4Q5NUL3 377 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 AKR1C8PQ5T2L2 129 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 C9orf66Q5T8R8 295 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 MIC13Q5XKP0 118 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 SPSB3Q6PJ21 355 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 ALKAL2Q6UX46 152 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 TMEM182Q6ZP80 229 aaPredicted RBP9.3□□□□□ -0.92
PTPRF-208ENST00000437607 STPG3Q8N7X2 389 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 BPIFCQ8NFQ6 507 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 OR5B12Q96R08 314 aa9.3□□□□□ -0.92
PTPRF-208ENST00000437607 F8W735 103 aaPredicted RBP9.29□□□□□ -0.92
PTPRF-208ENST00000437607 TOMM40O96008 361 aa9.29□□□□□ -0.92
PTPRF-208ENST00000437607 LINC00869P0C866 280 aa9.29□□□□□ -0.92
PTPRF-208ENST00000437607 RPL29P47914 159 aaKnown RBP9.29□□□□□ -0.92
PTPRF-208ENST00000437607 ZNF343Q6P1L6 599 aa9.29□□□□□ -0.92
PTPRF-208ENST00000437607 ZNF491Q8N8L2 437 aa9.29□□□□□ -0.92
PTPRF-208ENST00000437607 C4orf3Q8WVX3 66 aa9.29□□□□□ -0.92
PTPRF-208ENST00000437607 UBE2E2Q96LR5 201 aa9.29□□□□□ -0.92
PTPRF-208ENST00000437607 UBQLN2Q9UHD9 624 aa9.29□□□□□ -0.92
PTPRF-208ENST00000437607 ANKRD34BA5PLL1 514 aa9.28□□□□□ -0.92
PTPRF-208ENST00000437607 SEC14L6B5MCN3 397 aa9.28□□□□□ -0.92
PTPRF-208ENST00000437607 CFDP00746 253 aaPredicted RBP9.28□□□□□ -0.92
PTPRF-208ENST00000437607 IGKV1-17P01599 117 aa9.28□□□□□ -0.92
PTPRF-208ENST00000437607 MBP02144 154 aa9.28□□□□□ -0.92
PTPRF-208ENST00000437607 CLEC3BP05452 202 aa9.28□□□□□ -0.92
PTPRF-208ENST00000437607 YPEL3P61236 119 aaPredicted RBP9.28□□□□□ -0.92
PTPRF-208ENST00000437607 LYZP61626 148 aa9.28□□□□□ -0.92
PTPRF-208ENST00000437607 SERF2P84101 59 aa9.28□□□□□ -0.92
PTPRF-208ENST00000437607 ZNF90Q03938 601 aa9.28□□□□□ -0.92
PTPRF-208ENST00000437607 ACOT6Q3I5F7 207 aaPredicted RBP9.28□□□□□ -0.92
PTPRF-208ENST00000437607 TEX261Q6UWH6 196 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms