RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 RBP4P02753 201 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 AREGP15514 252 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 BRS3P32247 399 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 UBE2G1P62253 170 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 GDF5OSQ5U4N7 250 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 EXOC3-AS1Q8N2X6 119 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 ZBTB34Q8NCN2 500 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 SARAFQ96BY9 339 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 CLEC7AQ9BXN2 247 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 HES4Q9HCC6 221 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 DKK4Q9UBT3 224 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 ZFP30Q9Y2G7 519 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 SONP18583 2426 aaKnown RBP7.02□□□□□ -1.29
USP40-203ENST00000427112 J3QW42 95 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 KLK10O43240 276 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 LINC00305Q7Z4B0 112 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 RNASEH2CQ8TDP1 164 aaKnown RBP7.02□□□□□ -1.29
USP40-203ENST00000427112 KBTBD11-OT1A0A1B0GTJ5 212 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 DPRXA6NFQ7 191 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 PPIAL4DF5H284 164 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 K7EQM0 130 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 IGHV1-46P01743 117 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 GPX1P07203 203 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 SELENOVP59797 346 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 CIARTQ8N365 385 aaPredicted RBP7.02□□□□□ -1.29
USP40-203ENST00000427112 CLUHP3Q96NS8 147 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 PAXXQ9BUH6 204 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 RNF7Q9UBF6 113 aa7.02□□□□□ -1.29
USP40-203ENST00000427112 SLC25A10Q9UBX3 287 aaPredicted RBP7.02□□□□□ -1.29
USP40-203ENST00000427112 LCN2P80188 198 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 WT1-ASQ06250 92 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 FOXL1Q12952 345 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 LINC00322Q6ZN03 302 aaPredicted RBP7.01□□□□□ -1.29
USP40-203ENST00000427112 PRNTQ86SH4 94 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 SLC25A33Q9BSK2 321 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 SLC45A2Q9UMX9 530 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 HILPDAQ9Y5L2 63 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 CSMD2Q7Z408 3487 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 SERTM2A0A1B0GWG4 89 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 FTH1P19P0C7X4 201 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 RTL8BQ17RB0 113 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 PRR30Q53SZ7 412 aaPredicted RBP7.01□□□□□ -1.29
USP40-203ENST00000427112 C10orf113Q5VZT2 155 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 WDR73Q6P4I2 378 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 SPATA12Q7Z6I5 190 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 C17orf77Q96MU5 243 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 JPT1Q9UK76 154 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 TMEM136Q6ZRR5 245 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 CENPVQ7Z7K6 275 aaPredicted RBP7.01□□□□□ -1.29
USP40-203ENST00000427112 TSKUQ8WUA8 353 aa7.01□□□□□ -1.29
USP40-203ENST00000427112 CYC1P08574 325 aa7□□□□□ -1.29
USP40-203ENST00000427112 SFTA2Q6UW10 78 aa7□□□□□ -1.29
USP40-203ENST00000427112 OR1N2Q8NGR9 330 aa7□□□□□ -1.29
USP40-203ENST00000427112 PRR33A8MZF0 331 aa7□□□□□ -1.29
USP40-203ENST00000427112 NUP35Q8NFH5 326 aa7□□□□□ -1.29
USP40-203ENST00000427112 DYNLRB1Q9NP97 96 aa7□□□□□ -1.29
USP40-203ENST00000427112 RPUSD1Q9UJJ7 312 aaKnown RBP7□□□□□ -1.29
USP40-203ENST00000427112 SLC25A15Q9Y619 301 aa7□□□□□ -1.29
USP40-203ENST00000427112 IGHV3-49A0A0A0MS15 119 aa7□□□□□ -1.29
USP40-203ENST00000427112 TRAV17A0A0B4J275 112 aa7□□□□□ -1.29
USP40-203ENST00000427112 PRSS46E5RG02 174 aa7□□□□□ -1.29
USP40-203ENST00000427112 CCL25O15444 150 aa7□□□□□ -1.29
USP40-203ENST00000427112 YPEL1O60688 119 aa7□□□□□ -1.29
USP40-203ENST00000427112 C8orf88P0DMB2 117 aa7□□□□□ -1.29
USP40-203ENST00000427112 ZNF788Q6ZQV5 615 aa7□□□□□ -1.29
USP40-203ENST00000427112 BCL6BQ8N143 479 aaPredicted RBP7□□□□□ -1.29
USP40-203ENST00000427112 BEND2Q8NDZ0 799 aa7□□□□□ -1.29
USP40-203ENST00000427112 GAFA1Q96PS6 74 aa7□□□□□ -1.29
USP40-203ENST00000427112 YPEL2Q96QA6 119 aa7□□□□□ -1.29
USP40-203ENST00000427112 SSUH2Q9Y2M2 353 aa7□□□□□ -1.29
USP40-203ENST00000427112 CRYBG3Q68DQ2 2970 aa7□□□□□ -1.29
USP40-203ENST00000427112 VWC2LB2RUY7 222 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 CHEK1O14757 476 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 HYPMO75409 117 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 TYMSP04818 313 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 RNASE2P10153 161 aaKnown RBP6.99□□□□□ -1.29
USP40-203ENST00000427112 CA7P43166 264 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 PDLIM4P50479 330 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 ERHP84090 104 aaKnown RBP6.99□□□□□ -1.29
USP40-203ENST00000427112 UBE2V1Q13404 147 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 FOXE3Q13461 319 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 VWC2Q2TAL6 325 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 TMEM177Q53S58 311 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 COA6Q5JTJ3 125 aaKnown RBP6.99□□□□□ -1.29
USP40-203ENST00000427112 EBLN2Q6P2I7 272 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 TEX45Q8NA69 505 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 FAM222BQ8WU58 562 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 TMEM186Q96B77 213 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 FBXL15Q9H469 300 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 F11RQ9Y624 299 aaKnown RBP6.99□□□□□ -1.29
USP40-203ENST00000427112 RAI1Q7Z5J4 1906 aaPredicted RBP6.99□□□□□ -1.29
USP40-203ENST00000427112 MYO9AB2RTY4 2548 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 IGHV3-66A0A0C4DH42 116 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 CGB1A6NKQ9 187 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 J3KRW8 73 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 K7EMI3 77 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 UPK2O00526 184 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 ZNF324O75467 553 aaPredicted RBP6.99□□□□□ -1.29
USP40-203ENST00000427112 HES1Q14469 280 aa6.99□□□□□ -1.29
USP40-203ENST00000427112 PATE2Q6UY27 113 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms