RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 GNG5P63218 68 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 SVIPQ8NHG7 77 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 FLVCR1-AS1Q8TAF5 88 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 TMEM190Q8WZ59 177 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 A0A087X0K7 114 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 ATP5L2Q7Z4Y8 100 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 CHTOPQ9Y3Y2 248 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 IGHV3-66A0A0C4DH42 116 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 CELA3BP08861 270 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 DUTP33316 252 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 CD300EQ496F6 205 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 COQ2Q96H96 371 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 RAMP3O60896 148 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 CDKN1BP46527 198 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 RBM3P98179 157 aaKnown RBP8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 ZNF664Q8N3J9 261 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 LINC01560Q8TB33 94 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 NCR2O95944 276 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 TSKUQ8WUA8 353 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 RNF125Q96EQ8 232 aa8.53□□□□□ -1.04
LIMCH1-203ENST00000396595 GREB1LQ9C091 1923 aaPredicted RBP8.52□□□□□ -1.04
LIMCH1-203ENST00000396595 CRYGSP22914 178 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 OVOL2Q9BRP0 275 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 PSG8Q9UQ74 426 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 J3KT08 172 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 NBR2O15453 112 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 CXCL1P09341 107 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 OR9G9P0C7N8 305 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 ANKRD29Q8N6D5 301 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 H3BMM0 161 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 CCL3L1P16619 93 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 TIMP3P35625 211 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 BSPH1Q075Z2 132 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 FOXL1Q12952 345 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 RALGAPA1Q6GYQ0 2036 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 UBE2WQ96B02 151 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 PYYP10082 97 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 SUPT4H1P63272 117 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 SMPXQ9UHP9 88 aa8.52□□□□□ -1.05
LIMCH1-203ENST00000396595 CLEC19AQ6UXS0 136 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 FAM57AQ8TBR7 257 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 PPDPFLQ8WWR9 84 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 JMJD8Q96S16 334 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 REG4Q9BYZ8 158 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 TNS1Q9HBL0 1735 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 MRPL55Q7Z7F7 128 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 ZIC4Q8N9L1 334 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 DEPPQ9NTK1 212 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 COLQQ9Y215 455 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 PATJQ8NI35 1801 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 NRXN2Q9P2S2 1712 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 IGHV3OR16-10A0A075B7F0 116 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 A8MWP6 167 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 VSIRQ9H7M9 311 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 IGKV1-12A0A0C4DH73 117 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 IGKV1D-12P01611 117 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 TDGF1P13385 188 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 CD33P20138 364 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 SRSF1Q07955 248 aaKnown RBP eCLIP8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 GUSBP1Q15486 140 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 LINC01559Q495D7 138 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 C9orf106Q8NAJ2 232 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 TOMM7Q9P0U1 55 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 C9JAW5 83 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 KLHDC3Q9BQ90 382 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 TMEM133Q9H2Q1 129 aa8.51□□□□□ -1.05
LIMCH1-203ENST00000396595 ZDBF2Q9HCK1 2354 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 DUX3Q96PT4 197 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 DOCK4Q8N1I0 1966 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 FAM231BA6NCW3 169 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 PLAURQ03405 335 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 ORMDL2Q53FV1 153 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 C5orf47Q569G3 176 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 CRIM1Q9NZV1 1036 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 TREML4Q6UXN2 200 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 GATD1Q8NB37 220 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 IFI27L1Q96BM0 104 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 FREM3P0C091 2139 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 TRAV8-3A0A0A6YYJ7 113 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 RNASE4P34096 147 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 SRSF8Q9BRL6 282 aaKnown RBP8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 RALGAPA2Q2PPJ7 1873 aa8.5□□□□□ -1.05
LIMCH1-203ENST00000396595 CACNA1EQ15878 2313 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 LINC01549A6NIU2 74 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 K7EP13 123 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 FAM166AQ6J272 317 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 ARHGEF17Q96PE2 2063 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 IGHV3OR16-8A0A075B7F1 116 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 F8W1H4 67 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 MST1P26927 711 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 IFI27P40305 119 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 DNAJC30Q96LL9 226 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 LAMTOR3Q9UHA4 124 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 NMSQ5H8A3 153 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 C1QTNF4Q9BXJ3 329 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 SNHG12Q9BXW3 62 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 F2Z2F3 143 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 SLAQ13239 276 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 LINC01551Q86U37 167 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 CCL19Q99731 98 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 202.1 ms