RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 ZNF257Q9Y2Q1 563 aa13.14□□□□□ -0.31
PCDH1-203ENST00000394536 FCGR2BP31994 310 aaPredicted RBP13.13□□□□□ -0.31
PCDH1-203ENST00000394536 TSKUQ8WUA8 353 aa13.13□□□□□ -0.31
PCDH1-203ENST00000394536 LSM4Q9Y4Z0 139 aaKnown RBP13.13□□□□□ -0.31
PCDH1-203ENST00000394536 DSPP15924 2871 aaKnown RBP13.13□□□□□ -0.31
PCDH1-203ENST00000394536 NUDT3O95989 172 aa13.13□□□□□ -0.31
PCDH1-203ENST00000394536 DIAPH2-AS1Q14236 149 aa13.13□□□□□ -0.31
PCDH1-203ENST00000394536 TMEM136Q6ZRR5 245 aa13.13□□□□□ -0.31
PCDH1-203ENST00000394536 MUC15Q8N387 334 aa13.13□□□□□ -0.31
PCDH1-203ENST00000394536 CUL9Q8IWT3 2517 aa13.13□□□□□ -0.31
PCDH1-203ENST00000394536 TCRBV4S1A1TA0A5B7 111 aa13.13□□□□□ -0.31
PCDH1-203ENST00000394536 NEUROG1Q92886 237 aa13.13□□□□□ -0.31
PCDH1-203ENST00000394536 WT1P19544 449 aaPredicted RBP13.12□□□□□ -0.31
PCDH1-203ENST00000394536 AARDQ4LEZ3 155 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 OR10J3Q5JRS4 329 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 MORN5Q5VZ52 161 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 TMEM200BQ69YZ2 307 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 NIT1Q86X76 327 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 UQCRFS1P47985 274 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 PRR20EP86478 221 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 PRR20CP86479 221 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 PRR20DP86480 221 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 PRR20BP86481 221 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 PRR20AP86496 221 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 MAJINQ3KP22 176 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 SSBP2P81877 361 aaPredicted RBP13.12□□□□□ -0.31
PCDH1-203ENST00000394536 TPTE2P1Q5T6R2 138 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 SLC25A48Q6ZT89 311 aaKnown RBP13.12□□□□□ -0.31
PCDH1-203ENST00000394536 C5orf17Q8NAS9 161 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 Q9H3A6 140 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 KIAA1549Q9HCM3 1950 aa13.12□□□□□ -0.31
PCDH1-203ENST00000394536 SCGB2A1O75556 95 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 ZNF788Q6ZQV5 615 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 S100A7AQ86SG5 101 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 HIF1ANQ9NWT6 349 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 KMT2EQ8IZD2 1858 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 IGKV1OR2-108A0A075B7D4 117 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 ATP5IP56385 69 aaPredicted RBP13.11□□□□□ -0.31
PCDH1-203ENST00000394536 ARF6P62330 175 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 Q0VG73 95 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 Q6ZVH6 145 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 C20orf144Q9BQM9 153 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 RPP21Q9H633 154 aaKnown RBP13.11□□□□□ -0.31
PCDH1-203ENST00000394536 MUC6Q6W4X9 2439 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 RIGQ13278 110 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 LYPD2Q6UXB3 125 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 C1orf229Q6ZS94 237 aaPredicted RBP13.11□□□□□ -0.31
PCDH1-203ENST00000394536 EXOC3-AS1Q8N2X6 119 aa13.11□□□□□ -0.31
PCDH1-203ENST00000394536 SFTPCP11686 197 aa13.1□□□□□ -0.31
PCDH1-203ENST00000394536 TDGF1P13385 188 aa13.1□□□□□ -0.31
PCDH1-203ENST00000394536 H0YJW9 148 aa13.1□□□□□ -0.31
PCDH1-203ENST00000394536 FCER1GP30273 86 aa13.1□□□□□ -0.31
PCDH1-203ENST00000394536 SLC25A34Q6PIV7 304 aa13.1□□□□□ -0.31
PCDH1-203ENST00000394536 CIARTQ8N365 385 aaPredicted RBP13.1□□□□□ -0.31
PCDH1-203ENST00000394536 C18orf32Q8TCD1 76 aa13.1□□□□□ -0.31
PCDH1-203ENST00000394536 LY96Q9Y6Y9 160 aa13.1□□□□□ -0.31
PCDH1-203ENST00000394536 IGLV1-44P01699 117 aa13.09□□□□□ -0.31
PCDH1-203ENST00000394536 ORM1P02763 201 aa13.09□□□□□ -0.31
PCDH1-203ENST00000394536 IL4P05112 153 aa13.09□□□□□ -0.31
PCDH1-203ENST00000394536 CD3EP07766 207 aa13.09□□□□□ -0.31
PCDH1-203ENST00000394536 LGALS7P47929 136 aa13.09□□□□□ -0.31
PCDH1-203ENST00000394536 BPIFA4PQ86YQ2 179 aa13.09□□□□□ -0.31
PCDH1-203ENST00000394536 ZNF785A8K8V0 405 aa13.09□□□□□ -0.31
PCDH1-203ENST00000394536 COL5A1P20908 1838 aaPredicted RBP13.09□□□□□ -0.31
PCDH1-203ENST00000394536 WT1-ASQ06250 92 aa13.09□□□□□ -0.31
PCDH1-203ENST00000394536 TMPRSS3P57727 454 aa13.09□□□□□ -0.31
PCDH1-203ENST00000394536 C11orf52Q96A22 123 aa13.09□□□□□ -0.31
PCDH1-203ENST00000394536 TRAV9-2A0A087WT02 112 aa13.08□□□□□ -0.32
PCDH1-203ENST00000394536 PNKDQ8N490 385 aa13.08□□□□□ -0.32
PCDH1-203ENST00000394536 TIMD4Q96H15 378 aa13.08□□□□□ -0.32
PCDH1-203ENST00000394536 SCNM1Q9BWG6 230 aa13.08□□□□□ -0.32
PCDH1-203ENST00000394536 TPSG1Q9NRR2 321 aa13.08□□□□□ -0.32
PCDH1-203ENST00000394536 HSPB8Q9UJY1 196 aa13.08□□□□□ -0.32
PCDH1-203ENST00000394536 IGF2RP11717 2491 aa13.08□□□□□ -0.32
PCDH1-203ENST00000394536 IGHV3-23P01764 117 aa13.08□□□□□ -0.32
PCDH1-203ENST00000394536 CHODLQ9H9P2 273 aa13.08□□□□□ -0.32
PCDH1-203ENST00000394536 hDV102S1A0JD36 115 aa13.08□□□□□ -0.32
PCDH1-203ENST00000394536 WFDC3Q8IUB2 231 aa13.08□□□□□ -0.32
PCDH1-203ENST00000394536 AP5S1Q9NUS5 200 aa13.08□□□□□ -0.32
PCDH1-203ENST00000394536 KIR2DL5BA0A0G2JN68 375 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 KIR2DL5BA0A0G2JPC4 375 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 FAM181BA6NEQ2 426 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 ZNF841Q6ZN19 808 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 ASCL5Q7RTU5 278 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 KIR2DL5AQ8N109 375 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 FNDC4Q9H6D8 234 aaPredicted RBP13.07□□□□□ -0.32
PCDH1-203ENST00000394536 PPIAL4CA0A0B4J2A2 164 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 IGHV1-69-2A0A0G2JMI3 117 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 C19orf67A6NJJ6 358 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 PPIAL4GP0DN37 164 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 MEF2CQ06413 473 aaPredicted RBP13.07□□□□□ -0.32
PCDH1-203ENST00000394536 IGHV3OR16-13A0A075B7E8 117 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 IGHV3-74A0A0B4J1X5 117 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 RPL11P62913 178 aaKnown RBP13.07□□□□□ -0.32
PCDH1-203ENST00000394536 TEX43Q6ZNM6 134 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 SPACA3Q8IXA5 215 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 FREM2Q5SZK8 3169 aa13.07□□□□□ -0.32
PCDH1-203ENST00000394536 APOHP02749 345 aaPredicted RBP13.06□□□□□ -0.32
PCDH1-203ENST00000394536 ARL3P36405 182 aa13.06□□□□□ -0.32
PCDH1-203ENST00000394536 FOXC1Q12948 553 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms