RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 MRPL52Q86TS9 123 aaKnown RBP20.29■□□□□ 0.84
C9orf40-201ENST00000376854 TMEM133Q9H2Q1 129 aa20.29■□□□□ 0.84
C9orf40-201ENST00000376854 TNXAQ16473 311 aa20.28■□□□□ 0.84
C9orf40-201ENST00000376854 C11orf42Q8N5U0 333 aa20.28■□□□□ 0.84
C9orf40-201ENST00000376854 TSKUQ8WUA8 353 aa20.28■□□□□ 0.84
C9orf40-201ENST00000376854 CHRDL1Q9BU40 450 aa20.28■□□□□ 0.84
C9orf40-201ENST00000376854 APELAP0DMC3 54 aa20.28■□□□□ 0.84
C9orf40-201ENST00000376854 HIST1H1EP10412 219 aaKnown RBP20.28■□□□□ 0.84
C9orf40-201ENST00000376854 ZNF841Q6ZN19 808 aa20.28■□□□□ 0.84
C9orf40-201ENST00000376854 C19orf35Q6ZS72 473 aa20.28■□□□□ 0.84
C9orf40-201ENST00000376854 TEX45Q8NA69 505 aa20.28■□□□□ 0.84
C9orf40-201ENST00000376854 OR4B1Q8NGF8 309 aa20.28■□□□□ 0.84
C9orf40-201ENST00000376854 TRGV9Q99603 122 aa20.28■□□□□ 0.84
C9orf40-201ENST00000376854 PGPA6NDG6 321 aa20.27■□□□□ 0.84
C9orf40-201ENST00000376854 GDF5OSQ5U4N7 250 aa20.27■□□□□ 0.84
C9orf40-201ENST00000376854 SSX8Q7RTT4 187 aa20.27■□□□□ 0.84
C9orf40-201ENST00000376854 FAM19A2Q8N3H0 131 aa20.27■□□□□ 0.84
C9orf40-201ENST00000376854 C18orf32Q8TCD1 76 aa20.27■□□□□ 0.84
C9orf40-201ENST00000376854 C22orf15Q8WYQ4 148 aa20.27■□□□□ 0.84
C9orf40-201ENST00000376854 SGK494Q96LW2 274 aa20.27■□□□□ 0.84
C9orf40-201ENST00000376854 C7orf69Q9H7B7 122 aa20.27■□□□□ 0.84
C9orf40-201ENST00000376854 RPL27AP46776 148 aaKnown RBP20.27■□□□□ 0.84
C9orf40-201ENST00000376854 PVRIGQ6DKI7 326 aa20.27■□□□□ 0.84
C9orf40-201ENST00000376854 TLN1Q9Y490 2541 aaKnown RBP20.27■□□□□ 0.83
C9orf40-201ENST00000376854 SHISA9B4DS77 424 aa20.26■□□□□ 0.83
C9orf40-201ENST00000376854 NIT1Q86X76 327 aa20.26■□□□□ 0.83
C9orf40-201ENST00000376854 SPACA3Q8IXA5 215 aa20.26■□□□□ 0.83
C9orf40-201ENST00000376854 RPH3ALQ9UNE2 315 aa20.26■□□□□ 0.83
C9orf40-201ENST00000376854 IGHV3-21A0A0B4J1V1 117 aa20.26■□□□□ 0.83
C9orf40-201ENST00000376854 E7EQL1 145 aa20.26■□□□□ 0.83
C9orf40-201ENST00000376854 CORTO00230 105 aa20.26■□□□□ 0.83
C9orf40-201ENST00000376854 CNTFRP26992 372 aa20.26■□□□□ 0.83
C9orf40-201ENST00000376854 MRPL27Q9P0M9 148 aaKnown RBP20.26■□□□□ 0.83
C9orf40-201ENST00000376854 HIGD1CA8MV81 97 aa20.25■□□□□ 0.83
C9orf40-201ENST00000376854 NBEAP1P0C6P0 100 aa20.25■□□□□ 0.83
C9orf40-201ENST00000376854 FOXC1Q12948 553 aa20.25■□□□□ 0.83
C9orf40-201ENST00000376854 TMEM116Q8NCL8 245 aa20.25■□□□□ 0.83
C9orf40-201ENST00000376854 IGHV1-69-2A0A0G2JMI3 117 aa20.25■□□□□ 0.83
C9orf40-201ENST00000376854 NTF3P20783 257 aa20.25■□□□□ 0.83
C9orf40-201ENST00000376854 DLX1P56177 255 aa20.25■□□□□ 0.83
C9orf40-201ENST00000376854 HYPMO75409 117 aa20.24■□□□□ 0.83
C9orf40-201ENST00000376854 C3orf79P0CE67 100 aa20.24■□□□□ 0.83
C9orf40-201ENST00000376854 KLF12Q9Y4X4 402 aa20.24■□□□□ 0.83
C9orf40-201ENST00000376854 G0S2P27469 103 aa20.24■□□□□ 0.83
C9orf40-201ENST00000376854 PRRX1P54821 245 aa20.24■□□□□ 0.83
C9orf40-201ENST00000376854 GPR82Q96P67 336 aa20.24■□□□□ 0.83
C9orf40-201ENST00000376854 ZNF835Q9Y2P0 537 aa20.24■□□□□ 0.83
C9orf40-201ENST00000376854 IGHV2-26A0A0B4J1V2 119 aa20.23■□□□□ 0.83
C9orf40-201ENST00000376854 CRYGBP07316 175 aa20.23■□□□□ 0.83
C9orf40-201ENST00000376854 NGBQ9NPG2 151 aa20.23■□□□□ 0.83
C9orf40-201ENST00000376854 RPLP1P05386 114 aaKnown RBP20.22■□□□□ 0.83
C9orf40-201ENST00000376854 CAMPP49913 170 aa20.22■□□□□ 0.83
C9orf40-201ENST00000376854 PRB3Q04118 309 aaPredicted RBP20.22■□□□□ 0.83
C9orf40-201ENST00000376854 BORCS7Q96B45 105 aa20.22■□□□□ 0.83
C9orf40-201ENST00000376854 SMIM12Q96EX1 92 aa20.22■□□□□ 0.83
C9orf40-201ENST00000376854 SIGLEC9Q9Y336 463 aa20.22■□□□□ 0.83
C9orf40-201ENST00000376854 FAM87AP0C7U9 286 aa20.22■□□□□ 0.83
C9orf40-201ENST00000376854 CTRLP40313 264 aa20.22■□□□□ 0.83
C9orf40-201ENST00000376854 SPATA45Q537H7 98 aa20.22■□□□□ 0.83
C9orf40-201ENST00000376854 TNFRSF14Q92956 283 aa20.22■□□□□ 0.83
C9orf40-201ENST00000376854 SSBP4Q9BWG4 385 aaPredicted RBP20.22■□□□□ 0.83
C9orf40-201ENST00000376854 PLXNB1O43157 2135 aa20.22■□□□□ 0.83
C9orf40-201ENST00000376854 GP9P14770 177 aa20.21■□□□□ 0.83
C9orf40-201ENST00000376854 INSIG2Q9Y5U4 225 aa20.21■□□□□ 0.83
C9orf40-201ENST00000376854 VWC2LB2RUY7 222 aa20.21■□□□□ 0.83
C9orf40-201ENST00000376854 GPR6P46095 362 aaPredicted RBP20.21■□□□□ 0.83
C9orf40-201ENST00000376854 LEMD1Q68G75 181 aa20.21■□□□□ 0.83
C9orf40-201ENST00000376854 H3BTX0 84 aa20.2■□□□□ 0.82
C9orf40-201ENST00000376854 CA7P43166 264 aa20.2■□□□□ 0.82
C9orf40-201ENST00000376854 KLF5Q13887 457 aaPredicted RBP20.2■□□□□ 0.82
C9orf40-201ENST00000376854 ATP5L2Q7Z4Y8 100 aa20.2■□□□□ 0.82
C9orf40-201ENST00000376854 C5orf17Q8NAS9 161 aa20.2■□□□□ 0.82
C9orf40-201ENST00000376854 C8orf46Q8TAG6 207 aa20.2■□□□□ 0.82
C9orf40-201ENST00000376854 MLST8Q9BVC4 326 aa20.2■□□□□ 0.82
C9orf40-201ENST00000376854 GSX1Q9H4S2 264 aaPredicted RBP20.2■□□□□ 0.82
C9orf40-201ENST00000376854 RALYQ9UKM9 306 aaKnown RBP20.2■□□□□ 0.82
C9orf40-201ENST00000376854 IGLV1-47P01700 117 aa20.2■□□□□ 0.82
C9orf40-201ENST00000376854 CASP6P55212 293 aa20.2■□□□□ 0.82
C9orf40-201ENST00000376854 FMC1Q96HJ9 113 aa20.2■□□□□ 0.82
C9orf40-201ENST00000376854 ALKBH7Q9BT30 221 aaPredicted RBP20.2■□□□□ 0.82
C9orf40-201ENST00000376854 IGHV1-3A0A0C4DH29 117 aa20.19■□□□□ 0.82
C9orf40-201ENST00000376854 OR2J3O76001 311 aa20.19■□□□□ 0.82
C9orf40-201ENST00000376854 ZNF124Q15973 351 aa20.19■□□□□ 0.82
C9orf40-201ENST00000376854 Q9H3A6 140 aa20.19■□□□□ 0.82
C9orf40-201ENST00000376854 RPP21Q9H633 154 aaKnown RBP20.19■□□□□ 0.82
C9orf40-201ENST00000376854 F11RQ9Y624 299 aaKnown RBP20.19■□□□□ 0.82
C9orf40-201ENST00000376854 RELNP78509 3460 aa20.19■□□□□ 0.82
C9orf40-201ENST00000376854 A0A1B0GXF2 115 aa20.19■□□□□ 0.82
C9orf40-201ENST00000376854 HSBP1O75506 76 aa20.19■□□□□ 0.82
C9orf40-201ENST00000376854 TOMM40O96008 361 aa20.19■□□□□ 0.82
C9orf40-201ENST00000376854 LINC00322Q6ZN03 302 aaPredicted RBP20.19■□□□□ 0.82
C9orf40-201ENST00000376854 TCF24Q7RTU0 167 aa20.19■□□□□ 0.82
C9orf40-201ENST00000376854 PPP1R27Q86WC6 154 aa20.19■□□□□ 0.82
C9orf40-201ENST00000376854 ZNF25P17030 456 aaPredicted RBP20.18■□□□□ 0.82
C9orf40-201ENST00000376854 APOBEC3AP31941 199 aaPredicted RBP20.18■□□□□ 0.82
C9orf40-201ENST00000376854 PLP1P60201 277 aa20.18■□□□□ 0.82
C9orf40-201ENST00000376854 BATFQ16520 125 aa20.18■□□□□ 0.82
C9orf40-201ENST00000376854 POLEQ07864 2286 aa20.18■□□□□ 0.82
C9orf40-201ENST00000376854 TEX22C9J3V5 150 aa20.18■□□□□ 0.82
C9orf40-201ENST00000376854 BUB1B-PAK6H3BSN5 160 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms