RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TOMM40O96008 361 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 ZCCHC24Q8N2G6 241 aaKnown RBP13.17□□□□□ -0.3
SDC4-201ENST00000372733 PGLYRP4Q96LB8 373 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 ASCL3Q9NQ33 180 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 RP1L1Q8IWN7 2480 aaPredicted RBP13.17□□□□□ -0.3
SDC4-201ENST00000372733 A0A1W2PPI3 338 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 NKX6-3A6NJ46 265 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 TNFSF4P23510 183 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 ZNF137PP52743 207 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 TEX36Q5VZQ5 186 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 MUC15Q8N387 334 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 ZNF738Q8NE65 137 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 OR10X1Q8NGY0 326 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 SSUH2Q9Y2M2 353 aa13.17□□□□□ -0.3
SDC4-201ENST00000372733 OR4C46A6NHA9 309 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 SLC25A17O43808 307 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 IGLV2-23P01705 113 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 LEMD1Q68G75 181 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 HCP5Q6MZN7 132 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 ERASQ7Z444 233 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 OR4C13Q8NGP0 309 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 GPR82Q96P67 336 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 FAM215AQ9Y5M1 114 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 IGHV3-21A0A0B4J1V1 117 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 IGHV1-24A0A0C4DH33 117 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 APELAP0DMC3 54 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 CA7P43166 264 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 PERPQ96FX8 193 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 MLST8Q9BVC4 326 aa13.16□□□□□ -0.3
SDC4-201ENST00000372733 SUB1P53999 127 aaKnown RBP eCLIP13.15□□□□□ -0.3
SDC4-201ENST00000372733 UBE2V1Q13404 147 aa13.15□□□□□ -0.3
SDC4-201ENST00000372733 DEFB109BQ30KR1 87 aa13.15□□□□□ -0.3
SDC4-201ENST00000372733 RITA1Q96K30 269 aa13.15□□□□□ -0.3
SDC4-201ENST00000372733 KLF12Q9Y4X4 402 aa13.15□□□□□ -0.3
SDC4-201ENST00000372733 hDV102S1A0JD36 115 aa13.15□□□□□ -0.3
SDC4-201ENST00000372733 TMEM200BQ69YZ2 307 aa13.15□□□□□ -0.3
SDC4-201ENST00000372733 VSTM2AQ8TAG5 236 aa13.15□□□□□ -0.3
SDC4-201ENST00000372733 H1FXQ92522 213 aaKnown RBP13.15□□□□□ -0.3
SDC4-201ENST00000372733 P01737 135 aa13.14□□□□□ -0.31
SDC4-201ENST00000372733 NBEAP1P0C6P0 100 aa13.14□□□□□ -0.31
SDC4-201ENST00000372733 FAM27E3Q08E93 113 aa13.14□□□□□ -0.31
SDC4-201ENST00000372733 Q71RC1 249 aaPredicted RBP13.14□□□□□ -0.31
SDC4-201ENST00000372733 ROS1P08922 2347 aa13.14□□□□□ -0.31
SDC4-201ENST00000372733 FAM87AP0C7U9 286 aa13.14□□□□□ -0.31
SDC4-201ENST00000372733 LOC105371242A0A075B767 164 aa13.13□□□□□ -0.31
SDC4-201ENST00000372733 IGHV3-72A0A0B4J1Y9 119 aa13.13□□□□□ -0.31
SDC4-201ENST00000372733 A8MWL6 223 aa13.13□□□□□ -0.31
SDC4-201ENST00000372733 OR4A5Q8NH83 315 aa13.13□□□□□ -0.31
SDC4-201ENST00000372733 PRSS22Q9GZN4 317 aa13.13□□□□□ -0.31
SDC4-201ENST00000372733 WASHC3Q9Y3C0 194 aa13.13□□□□□ -0.31
SDC4-201ENST00000372733 SYS1-DBNDD2H3BUS1 97 aa13.13□□□□□ -0.31
SDC4-201ENST00000372733 GP9P14770 177 aa13.13□□□□□ -0.31
SDC4-201ENST00000372733 CD40P25942 277 aa13.13□□□□□ -0.31
SDC4-201ENST00000372733 MCRIP2Q9BUT9 160 aaKnown RBP13.13□□□□□ -0.31
SDC4-201ENST00000372733 TRAV8-1A0A0A6YYK1 113 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 C19orf71A6NCJ1 209 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 LTAP01374 205 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 ZNF138P52744 262 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 RBX1P62877 108 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 FBLN7Q53RD9 439 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 MPV17L2Q567V2 206 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 C5orf17Q8NAS9 161 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 STXBP6Q8NFX7 210 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 Q9H3A6 140 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 GSX1Q9H4S2 264 aaPredicted RBP13.12□□□□□ -0.31
SDC4-201ENST00000372733 TOX4O94842 621 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 LEPROTL1O95214 131 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 MEF2CQ06413 473 aaPredicted RBP13.12□□□□□ -0.31
SDC4-201ENST00000372733 MRGPRG-AS1Q2M3A8 158 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 LOXL4Q96JB6 756 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 DCHS1Q96JQ0 3298 aa13.12□□□□□ -0.31
SDC4-201ENST00000372733 TCRAP04437 139 aa13.11□□□□□ -0.31
SDC4-201ENST00000372733 C3orf36Q3SXR2 165 aa13.11□□□□□ -0.31
SDC4-201ENST00000372733 SMIM12Q96EX1 92 aa13.11□□□□□ -0.31
SDC4-201ENST00000372733 FMC1Q96HJ9 113 aa13.11□□□□□ -0.31
SDC4-201ENST00000372733 ZNF835Q9Y2P0 537 aa13.11□□□□□ -0.31
SDC4-201ENST00000372733 CRXO43186 299 aaPredicted RBP13.11□□□□□ -0.31
SDC4-201ENST00000372733 VMA21Q3ZAQ7 101 aa13.11□□□□□ -0.31
SDC4-201ENST00000372733 CT83Q5H943 113 aa13.11□□□□□ -0.31
SDC4-201ENST00000372733 CHCHD1Q96BP2 118 aaKnown RBP13.11□□□□□ -0.31
SDC4-201ENST00000372733 ST20Q9HBF5 79 aa13.11□□□□□ -0.31
SDC4-201ENST00000372733 ZNF492Q9P255 531 aa13.11□□□□□ -0.31
SDC4-201ENST00000372733 EP300Q09472 2414 aaPredicted RBP13.11□□□□□ -0.31
SDC4-201ENST00000372733 IGHV2-70DA0A0C4DH43 119 aa13.1□□□□□ -0.31
SDC4-201ENST00000372733 H0Y8G0 127 aa13.1□□□□□ -0.31
SDC4-201ENST00000372733 ENSAO43768 121 aaKnown RBP13.1□□□□□ -0.31
SDC4-201ENST00000372733 LYPD2Q6UXB3 125 aa13.1□□□□□ -0.31
SDC4-201ENST00000372733 RBPMS2Q6ZRY4 209 aaKnown RBP13.1□□□□□ -0.31
SDC4-201ENST00000372733 CRYGCP07315 174 aa13.1□□□□□ -0.31
SDC4-201ENST00000372733 PRB4P10163 310 aaPredicted RBP13.1□□□□□ -0.31
SDC4-201ENST00000372733 FAM162BQ5T6X4 162 aa13.1□□□□□ -0.31
SDC4-201ENST00000372733 CIARTQ8N365 385 aaPredicted RBP13.1□□□□□ -0.31
SDC4-201ENST00000372733 DAZAP1Q96EP5 407 aaKnown RBP13.1□□□□□ -0.31
SDC4-201ENST00000372733 LOC102724200A0A096LPH7 203 aaPredicted RBP13.09□□□□□ -0.31
SDC4-201ENST00000372733 CHEK1O14757 476 aa13.09□□□□□ -0.31
SDC4-201ENST00000372733 C1orf185Q5T7R7 199 aa13.09□□□□□ -0.31
SDC4-201ENST00000372733 Q86TA4 180 aa13.09□□□□□ -0.31
SDC4-201ENST00000372733 TMEM186Q96B77 213 aa13.09□□□□□ -0.31
SDC4-201ENST00000372733 TRGV9Q99603 122 aa13.09□□□□□ -0.31
SDC4-201ENST00000372733 C1RLQ9NZP8 487 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms