RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 MIXL1Q9H2W2 232 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 C20orf141Q9NUB4 165 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 FLVCR2Q9UPI3 526 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 UBR2Q8IWV8 1755 aa3.32□□□□□ -1.88
USH2A-202ENST00000366942 DOCK10Q96BY6 2186 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 MYO9AB2RTY4 2548 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 TRAV1-2A0A0B4J238 106 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 LOC389332A0A1B0GUA5 103 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 MARCH11A6NNE9 402 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 SRRM4A7MD48 611 aaKnown RBP3.31□□□□□ -1.88
USH2A-202ENST00000366942 TNFRSF13BO14836 293 aaPredicted RBP3.31□□□□□ -1.88
USH2A-202ENST00000366942 ICMTO60725 284 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 IGFBP3P17936 291 aaPredicted RBP3.31□□□□□ -1.88
USH2A-202ENST00000366942 CFPP27918 469 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 CEBPDP49716 269 aaPredicted RBP3.31□□□□□ -1.88
USH2A-202ENST00000366942 TMEM50BP56557 158 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 SRSF6Q13247 344 aaKnown RBP3.31□□□□□ -1.88
USH2A-202ENST00000366942 DEFB135Q30KP9 77 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 PET117Q6UWS5 81 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 CAMK2N2Q96S95 79 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 PYGO2Q9BRQ0 406 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 TCEAL7Q9BRU2 100 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 IGHV3-66A0A0C4DH42 116 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 KIR2DL5BA0A0G2JN68 375 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 KIR2DL5BA0A0G2JPC4 375 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 FCN3O75636 299 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 SCGB1D1O95968 90 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 IGHV3-23P01764 117 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 IGLL1P15814 213 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 DIAPH2-AS1Q14236 149 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 RBMY1FQ15415 496 aaKnown RBP3.31□□□□□ -1.88
USH2A-202ENST00000366942 KIR2DL5AQ8N109 375 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 RBKSQ9H477 322 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 TJP1Q07157 1748 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 SNRNP200O75643 2136 aaKnown RBP3.31□□□□□ -1.88
USH2A-202ENST00000366942 TLN1Q9Y490 2541 aaKnown RBP3.31□□□□□ -1.88
USH2A-202ENST00000366942 IGF1P05019 195 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 CD28P10747 220 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 LINC00336Q6ZUF6 198 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 SFRP2Q96HF1 295 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 KLK15Q9H2R5 256 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 RPS10P5Q9NQ39 176 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 JKAMPQ9P055 326 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 NAT8BQ9UHF3 227 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 ING1Q9UK53 422 aaPredicted RBP3.31□□□□□ -1.88
USH2A-202ENST00000366942 FUT9Q9Y231 359 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 SORL1Q92673 2214 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 VWC2LB2RUY7 222 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 NME4O00746 187 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 FOLR2P14207 255 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 MDKP21741 143 aaPredicted RBP3.31□□□□□ -1.88
USH2A-202ENST00000366942 PGFP49763 221 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 CYP2G1PQ6ZSU1 146 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 MRGPRFQ96AM1 343 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 MS4A6AQ9H2W1 248 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 KCNE5Q9UJ90 142 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 USP9XQ93008 2570 aaPredicted RBP3.31□□□□□ -1.88
USH2A-202ENST00000366942 BUB3O43684 328 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 IGKV1D-16P01601 117 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 IGKV1-16P04430 117 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 ICAM4Q14773 271 aa3.31□□□□□ -1.88
USH2A-202ENST00000366942 FAM103A1Q9BTL3 118 aaKnown RBP3.31□□□□□ -1.88
USH2A-202ENST00000366942 PGPEP1LA6NFU8 196 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 M0R2Z0 102 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 GRNP28799 593 aaKnown RBP3.3□□□□□ -1.88
USH2A-202ENST00000366942 SUMO1P63165 101 aaKnown RBP3.3□□□□□ -1.88
USH2A-202ENST00000366942 FAM201AQ5SY85 155 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 C1orf159Q96HA4 380 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 DNAJC30Q96LL9 226 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 C11orf68Q9H3H3 251 aaKnown RBP3.3□□□□□ -1.88
USH2A-202ENST00000366942 CYSLTR1Q9Y271 337 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 STRCP1A6NGW2 1772 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 NAV1Q8NEY1 1877 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 TRBV20-1A0A075B6N2 111 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 TRBV5-3A0A0A0MS03 114 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 HLA-DMBP28068 263 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 XCL1P47992 114 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 P2RY4P51582 365 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 SLC51BQ86UW2 128 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 FGFRL1Q8N441 504 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 C20orf144Q9BQM9 153 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 KAAG1Q9UBP8 84 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 CTXND1A0A1B0GTU2 59 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 A0A1B0GWJ7 208 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 hDV102S1A0JD36 115 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 F2Z2F3 143 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 CST7O76096 145 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 NBEAP1P0C6P0 100 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 LAIR2Q6ISS4 152 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 NCOR1P1Q9H4R4 102 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 AFDNP55196 1824 aaKnown RBP3.3□□□□□ -1.88
USH2A-202ENST00000366942 MYO5BQ9ULV0 1848 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 MYH11P35749 1972 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 NUP188Q5SRE5 1749 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 PLNP26678 52 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 CD83Q01151 205 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 TMEM200BQ69YZ2 307 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 FAM90A9PA6NNJ1 464 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 SMIM10L1P0DMW3 83 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 ZNF138P52744 262 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms