RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 PLP1P60201 277 aa14.53□□□□□ -0.08
CLN3-204ENST00000357857 YPEL3P61236 119 aaPredicted RBP14.53□□□□□ -0.08
CLN3-204ENST00000357857 SRSF3P84103 164 aaKnown RBP14.53□□□□□ -0.08
CLN3-204ENST00000357857 GUK1Q16774 197 aa14.53□□□□□ -0.08
CLN3-204ENST00000357857 C10orf113Q5VZT2 155 aa14.53□□□□□ -0.08
CLN3-204ENST00000357857 Q8N2B8 174 aa14.53□□□□□ -0.08
CLN3-204ENST00000357857 MRPL32Q9BYC8 188 aaKnown RBP14.53□□□□□ -0.08
CLN3-204ENST00000357857 GAR1Q9NY12 217 aaKnown RBP14.53□□□□□ -0.08
CLN3-204ENST00000357857 ELOA3CA0A087WX78 387 aaPredicted RBP14.52□□□□□ -0.08
CLN3-204ENST00000357857 CLDN34H7C241 214 aa14.52□□□□□ -0.08
CLN3-204ENST00000357857 ORM2P19652 201 aa14.52□□□□□ -0.08
CLN3-204ENST00000357857 TOR2AQ5JU69 321 aa14.52□□□□□ -0.08
CLN3-204ENST00000357857 PATE2Q6UY27 113 aa14.52□□□□□ -0.08
CLN3-204ENST00000357857 MIR17HGQ75NE6 70 aa14.52□□□□□ -0.08
CLN3-204ENST00000357857 OR51G1Q8NGK1 321 aa14.52□□□□□ -0.08
CLN3-204ENST00000357857 OR1B1Q8NGR6 318 aa14.52□□□□□ -0.08
CLN3-204ENST00000357857 USMG5Q96IX5 58 aa14.52□□□□□ -0.08
CLN3-204ENST00000357857 CCDC140Q96MF4 163 aa14.52□□□□□ -0.08
CLN3-204ENST00000357857 TMEM231Q9H6L2 316 aa14.52□□□□□ -0.08
CLN3-204ENST00000357857 NUPL2O15504 423 aaKnown RBP14.52□□□□□ -0.09
CLN3-204ENST00000357857 HYPMO75409 117 aa14.52□□□□□ -0.09
CLN3-204ENST00000357857 CTSGP08311 255 aa14.52□□□□□ -0.09
CLN3-204ENST00000357857 GPR183P32249 361 aa14.52□□□□□ -0.09
CLN3-204ENST00000357857 LYZP61626 148 aa14.52□□□□□ -0.09
CLN3-204ENST00000357857 ZNF418Q8TF45 676 aaPredicted RBP14.52□□□□□ -0.09
CLN3-204ENST00000357857 SCRT1Q9BWW7 348 aa14.52□□□□□ -0.09
CLN3-204ENST00000357857 EIF5A2Q9GZV4 153 aaKnown RBP14.52□□□□□ -0.09
CLN3-204ENST00000357857 KLK15Q9H2R5 256 aa14.52□□□□□ -0.09
CLN3-204ENST00000357857 TREM1Q9NP99 234 aa14.52□□□□□ -0.09
CLN3-204ENST00000357857 GNG13Q9P2W3 67 aa14.52□□□□□ -0.09
CLN3-204ENST00000357857 FAM181BA6NEQ2 426 aa14.51□□□□□ -0.09
CLN3-204ENST00000357857 RBFOX3A6NFN3 312 aa14.51□□□□□ -0.09
CLN3-204ENST00000357857 CXorf1O96002 111 aa14.51□□□□□ -0.09
CLN3-204ENST00000357857 IGHG4P01861 327 aa14.51□□□□□ -0.09
CLN3-204ENST00000357857 ARL14EPLP0DKL9 152 aa14.51□□□□□ -0.09
CLN3-204ENST00000357857 HAGHQ16775 308 aa14.51□□□□□ -0.09
CLN3-204ENST00000357857 CLEC19AQ6UXS0 136 aa14.51□□□□□ -0.09
CLN3-204ENST00000357857 Q71RC1 249 aaPredicted RBP14.51□□□□□ -0.09
CLN3-204ENST00000357857 ZNF329Q86UD4 541 aa14.51□□□□□ -0.09
CLN3-204ENST00000357857 IQCF2Q8IXL9 164 aa14.51□□□□□ -0.09
CLN3-204ENST00000357857 Q8WTZ3 238 aa14.51□□□□□ -0.09
CLN3-204ENST00000357857 ATP6V0BQ99437 205 aa14.51□□□□□ -0.09
CLN3-204ENST00000357857 TMPRSS5Q9H3S3 457 aa14.51□□□□□ -0.09
CLN3-204ENST00000357857 TECRQ9NZ01 308 aaKnown RBP14.51□□□□□ -0.09
CLN3-204ENST00000357857 TMEM89A2RUT3 159 aa14.5□□□□□ -0.09
CLN3-204ENST00000357857 CLEC3BP05452 202 aa14.5□□□□□ -0.09
CLN3-204ENST00000357857 CD5P06127 495 aa14.5□□□□□ -0.09
CLN3-204ENST00000357857 SLC35B1P78383 322 aa14.5□□□□□ -0.09
CLN3-204ENST00000357857 PEA15Q15121 130 aa14.5□□□□□ -0.09
CLN3-204ENST00000357857 CHRDL1Q9BU40 450 aa14.5□□□□□ -0.09
CLN3-204ENST00000357857 IFNA1P01562 189 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 ADMP35318 185 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 RAB9AP51151 201 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 TAS2R45P59539 299 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 PMS2P11Q13670 270 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 NARS2Q96I59 477 aaKnown RBP14.49□□□□□ -0.09
CLN3-204ENST00000357857 UHRF2Q96PU4 802 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 RARRES2Q99969 163 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 A0A0G2JLM5 398 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 WI2-2373I1.2A0A1W2PRP0 233 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 ANKRD34BA5PLL1 514 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 C8orf88P0DMB2 117 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 PSMB8P28062 276 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 PSMB3P49720 205 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 KHDC3LQ587J8 217 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 LINC00305Q7Z4B0 112 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 ZNF491Q8N8L2 437 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 RNF125Q96EQ8 232 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 HIGD1AQ9Y241 93 aa14.49□□□□□ -0.09
CLN3-204ENST00000357857 LOC102723971A0A1B0GUV8 181 aa14.48□□□□□ -0.09
CLN3-204ENST00000357857 TGOLN2O43493 480 aa14.48□□□□□ -0.09
CLN3-204ENST00000357857 OR2C1O95371 312 aa14.48□□□□□ -0.09
CLN3-204ENST00000357857 IL4P05112 153 aa14.48□□□□□ -0.09
CLN3-204ENST00000357857 RNASE1P07998 156 aaKnown RBP14.48□□□□□ -0.09
CLN3-204ENST00000357857 BCL2P10415 239 aa14.48□□□□□ -0.09
CLN3-204ENST00000357857 ZNF506Q5JVG8 444 aa14.48□□□□□ -0.09
CLN3-204ENST00000357857 MORN5Q5VZ52 161 aa14.48□□□□□ -0.09
CLN3-204ENST00000357857 LCNL1Q6ZST4 164 aa14.48□□□□□ -0.09
CLN3-204ENST00000357857 GNB4Q9HAV0 340 aa14.48□□□□□ -0.09
CLN3-204ENST00000357857 SERTAD4Q9NUC0 356 aa14.48□□□□□ -0.09
CLN3-204ENST00000357857 MTORP42345 2549 aa14.47□□□□□ -0.09
CLN3-204ENST00000357857 INAFM1C9JVW0 142 aa14.47□□□□□ -0.09
CLN3-204ENST00000357857 GCHFRP30047 84 aa14.47□□□□□ -0.09
CLN3-204ENST00000357857 PPT1P50897 306 aa14.47□□□□□ -0.09
CLN3-204ENST00000357857 HILS1P60008 231 aa14.47□□□□□ -0.09
CLN3-204ENST00000357857 TEX38Q6PEX7 206 aa14.47□□□□□ -0.09
CLN3-204ENST00000357857 C10orf99Q6UWK7 81 aa14.47□□□□□ -0.09
CLN3-204ENST00000357857 ZNF600Q6ZNG1 722 aa14.47□□□□□ -0.09
CLN3-204ENST00000357857 PQLC2Q6ZP29 291 aa14.47□□□□□ -0.09
CLN3-204ENST00000357857 Q6ZSV7 163 aa14.47□□□□□ -0.09
CLN3-204ENST00000357857 SLC25A2Q9BXI2 301 aa14.47□□□□□ -0.09
CLN3-204ENST00000357857 MANBALQ9NQG1 85 aa14.47□□□□□ -0.09
CLN3-204ENST00000357857 MRPL27Q9P0M9 148 aaKnown RBP14.47□□□□□ -0.09
CLN3-204ENST00000357857 TRAV5A0A0B4J249 113 aa14.46□□□□□ -0.09
CLN3-204ENST00000357857 KRBOX1C9JBD0 128 aa14.46□□□□□ -0.09
CLN3-204ENST00000357857 C9JQL5 133 aa14.46□□□□□ -0.09
CLN3-204ENST00000357857 OR7C2O60412 319 aa14.46□□□□□ -0.09
CLN3-204ENST00000357857 RPL15P61313 204 aaKnown RBP14.46□□□□□ -0.09
CLN3-204ENST00000357857 ICAM4Q14773 271 aa14.46□□□□□ -0.09
CLN3-204ENST00000357857 OR5AU1Q8NGC0 362 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms