RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 GLP1RP43220 463 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 GPR12P47775 334 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 ATP5G3P48201 142 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 HIST1H2BDP58876 126 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 HERV-K104P61576 105 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 HIST1H2BCP62807 126 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 TNFAIP6P98066 277 aaPredicted RBP1.78□□□□□ -2.13
VPS54-202ENST00000354504 PRB3Q04118 309 aaPredicted RBP1.78□□□□□ -2.13
VPS54-202ENST00000354504 UBE2V1Q13404 147 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 LY6DQ14210 128 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 HIST2H2BEQ16778 126 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 ACTL10Q5JWF8 245 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.78□□□□□ -2.13
VPS54-202ENST00000354504 SUMO4Q6EEV6 95 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 RBMS3Q6XE24 437 aaKnown RBP1.78□□□□□ -2.13
VPS54-202ENST00000354504 SLC35E3Q7Z769 313 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 TEX45Q8NA69 505 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 INO80EQ8NBZ0 244 aaPredicted RBP1.78□□□□□ -2.13
VPS54-202ENST00000354504 CCL17Q92583 94 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 HIST1H2BHQ93079 126 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 HIST1H2BNQ99877 126 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 HIST1H2BMQ99879 126 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 SLC35B3Q9H1N7 401 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 PSENENQ9NZ42 101 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 TGIF2-C20orf24A0A0A6YYL0 155 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 TRAV38-1A0A0B4J264 116 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 A0A1B0GXF2 115 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 SOCS3O14543 225 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 SOX15O60248 233 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 PET100P0DJ07 73 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 AKR1C3P42330 323 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 FGF8P55075 233 aaPredicted RBP1.77□□□□□ -2.13
VPS54-202ENST00000354504 ZNF90Q03938 601 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 SLC38A11Q08AI6 406 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 CLINT1Q14677 625 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 PSG5Q15238 335 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 GFI1BQ5VTD9 330 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 SLC25A24Q6NUK1 477 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 SPATA12Q7Z6I5 190 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 LHFPL4Q7Z7J7 247 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 OR4A5Q8NH83 315 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 FAM110AQ9BQ89 295 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 HINT2Q9BX68 163 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 TMEM133Q9H2Q1 129 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 C11orf21Q9P2W6 132 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 SIGLEC9Q9Y336 463 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 FN1P02751 2386 aaKnown RBP1.77□□□□□ -2.13
VPS54-202ENST00000354504 IGHV1-69-2A0A0G2JMI3 117 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 TRBV6-1A0A0K0K1D8 114 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 CCL24O00175 119 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 WRBO00258 174 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 VENTXO95231 258 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 KRASP01116 189 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 IGHV4-39P01824 125 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 SERPINE2P07093 398 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 IGLC1P0CG04 106 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 HSPE1P61604 102 aaKnown RBP1.77□□□□□ -2.13
VPS54-202ENST00000354504 SELENOTP62341 195 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 KLRB1Q12918 225 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 RHEBQ15382 184 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 CYP2G1PQ6ZSU1 146 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 SSX9Q7RTT3 188 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 ZNF695Q8IW36 515 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 IQCF2Q8IXL9 164 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 Q8N9W7 124 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 HSD17B11Q8NBQ5 300 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 OR13D1Q8NGV5 346 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 OR9G1Q8NH87 305 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 OR2T6Q8NHC8 308 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 HSPB9Q9BQS6 159 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 SLC25A33Q9BSK2 321 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.77□□□□□ -2.13
VPS54-202ENST00000354504 ZFP57Q9NU63 452 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 GNG12Q9UBI6 72 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 METTL1Q9UBP6 276 aaKnown RBP1.77□□□□□ -2.13
VPS54-202ENST00000354504 SESN1Q9Y6P5 492 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 SMIM27A0A1W2PRY6 76 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 TMEM250H0YL14 139 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 SPINT2O43291 252 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 IFNA21P01568 189 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 APOC3P02656 99 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 PRH1P02810 166 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 OPN1MWP04001 364 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 OPN1MW2P0DN77 364 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 OPN1MW3P0DN78 364 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 CHRNB4P30926 498 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 THBS3P49746 956 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 RAB13P51153 203 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 YPEL3P61236 119 aaPredicted RBP1.77□□□□□ -2.13
VPS54-202ENST00000354504 PNRC1Q12796 327 aaPredicted RBP1.77□□□□□ -2.13
VPS54-202ENST00000354504 ATP6V1FQ16864 119 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 MIR17HGQ75NE6 70 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 SSX8Q7RTT4 187 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 ZNF329Q86UD4 541 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 PDPNQ86YL7 162 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 HIST3H2BBQ8N257 126 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 NRACQ8N912 160 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 TMEM147Q9BVK8 224 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 DOK5Q9P104 306 aa1.77□□□□□ -2.13
VPS54-202ENST00000354504 ZNF580Q9UK33 172 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms