RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TEX38Q6PEX7 206 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 UHRF2Q96PU4 802 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 ZFP57Q9NU63 452 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 PLA2G2EQ9NZK7 142 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 IFNA5P01569 189 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 OR5G3P0C626 314 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 MAS1LP35410 378 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 LYZP61626 148 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 SRSF3P84103 164 aaKnown RBP7.17□□□□□ -1.26
USP4-202ENST00000351842 ATP5G2Q06055 141 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 TIGITQ495A1 244 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 PDLIM3Q53GG5 364 aaPredicted RBP7.17□□□□□ -1.26
USP4-202ENST00000351842 MIC13Q5XKP0 118 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 LEMD1Q68G75 181 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 EIF5AL1Q6IS14 154 aaKnown RBP7.17□□□□□ -1.26
USP4-202ENST00000351842 OR4X2Q8NGF9 303 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 OR1P1Q8NH06 330 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 C21orf62Q9NYP8 219 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 COMMD1Q8N668 190 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 OR52E5Q8NH55 327 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 CHRDL1Q9BU40 450 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 SLC25A22Q9H936 323 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 TMEM160Q9NX00 188 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 THYN1Q9P016 225 aa7.17□□□□□ -1.26
USP4-202ENST00000351842 H3BTX0 84 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 FHITP49789 147 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 BLOC1S1P78537 153 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 TMEM182Q6ZP80 229 aaPredicted RBP7.16□□□□□ -1.26
USP4-202ENST00000351842 C16orf82Q7Z2V1 217 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 ZNF709Q8N972 641 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 OR4F5Q8NH21 305 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 GPR61Q9BZJ8 451 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 PRDM13Q9H4Q3 707 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 IGKV1OR2-108A0A075B7D4 117 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 C5orf52A6NGY3 159 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 K7EIM0 57 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 UBE2CO00762 179 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 JTBO76095 146 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 CAMLGP49069 296 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 RAB5BP61020 215 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 RPL11P62913 178 aaKnown RBP7.16□□□□□ -1.26
USP4-202ENST00000351842 TMEM14EPQ6UXP3 125 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 OR1B1Q8NGR6 318 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 FAM110DQ8TAY7 271 aaPredicted RBP7.16□□□□□ -1.26
USP4-202ENST00000351842 CD69Q07108 199 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 TCTEX1D4Q5JR98 221 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 REC114Q7Z4M0 266 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 C3orf56Q8N813 242 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 DPF1Q92782 380 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 GINS3Q9BRX5 216 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 C19orf24Q9BVV8 132 aa7.16□□□□□ -1.26
USP4-202ENST00000351842 SEC11BP0C7V7 166 aa7.15□□□□□ -1.26
USP4-202ENST00000351842 RAB4AP20338 218 aa7.15□□□□□ -1.26
USP4-202ENST00000351842 EDN2P20800 178 aa7.15□□□□□ -1.26
USP4-202ENST00000351842 FABP9Q0Z7S8 132 aa7.15□□□□□ -1.26
USP4-202ENST00000351842 RXFP4Q8TDU9 374 aa7.15□□□□□ -1.26
USP4-202ENST00000351842 IGLV11-55A0A075B6I3 123 aa7.15□□□□□ -1.27
USP4-202ENST00000351842 AGPAT2O15120 278 aa7.15□□□□□ -1.27
USP4-202ENST00000351842 CYB5BO43169 146 aa7.15□□□□□ -1.27
USP4-202ENST00000351842 PPIFP30405 207 aaKnown RBP7.15□□□□□ -1.27
USP4-202ENST00000351842 TREML4Q6UXN2 200 aa7.15□□□□□ -1.27
USP4-202ENST00000351842 TTC9CQ8N5M4 171 aa7.15□□□□□ -1.27
USP4-202ENST00000351842 OR11H1Q8NG94 326 aa7.15□□□□□ -1.27
USP4-202ENST00000351842 TUBA4BQ9H853 241 aa7.15□□□□□ -1.27
USP4-202ENST00000351842 PUS1Q9Y606 427 aaKnown RBP eCLIP7.15□□□□□ -1.27
USP4-202ENST00000351842 IGF1P05019 195 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 IL4P05112 153 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 ARL3P36405 182 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 SLURP1P55000 103 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 SYNJ2BPP57105 145 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 ZNF616Q08AN1 781 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 C2orf83Q53S99 150 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 SAPCD1Q5SSQ6 148 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 NECAP1Q8NC96 275 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 OR2G3Q8NGZ4 309 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 CACNG8Q8WXS5 425 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 RCC1LQ96I51 464 aaKnown RBP7.14□□□□□ -1.27
USP4-202ENST00000351842 ATP5SQ99766 215 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 VSIRQ9H7M9 311 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 BORCS7-ASMTA0A0B4J1R7 106 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 CLPSL1A2RUU4 121 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 C1orf196B1AJZ1 125 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 ATP6V0CP27449 155 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 NPBWR1P48145 328 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 MFAP4P55083 255 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 RAB2AP61019 212 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 TEPPQ6URK8 271 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 TMEM86BQ8N661 226 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 C2orf88Q9BSF0 95 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 TMEM147Q9BVK8 224 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 GGACTQ9BVM4 153 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 CXorf65A6NEN9 183 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 ZNF705EA8MWA4 302 aaPredicted RBP7.14□□□□□ -1.27
USP4-202ENST00000351842 I3L2K1 104 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 LINC00869P0C866 280 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 TFPI2P48307 235 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 FGF8P55075 233 aaPredicted RBP7.14□□□□□ -1.27
USP4-202ENST00000351842 USF2Q15853 346 aaPredicted RBP7.14□□□□□ -1.27
USP4-202ENST00000351842 RPEL1Q2QD12 228 aa7.14□□□□□ -1.27
USP4-202ENST00000351842 CCDC140Q96MF4 163 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms