RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 FHL1Q13642 323 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 SPATA31B1PQ5VZV4 182 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 NUP37Q8NFH4 326 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 IGKV1D-8A0A087WSZ0 117 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 TSPAN13O95857 204 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 FAM19A2Q8N3H0 131 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 OR2K2Q8NGT1 345 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 TRAV8-6A0A0B4J262 113 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 UBE2V1Q13404 147 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 RNF182Q8N6D2 247 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 COQ2Q96H96 371 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 ZNF319Q9P2F9 582 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 IFI27L1Q96BM0 104 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 PF4V1P10720 104 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 MINOS1Q5TGZ0 78 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 MINOS1-NBL1R4GNA1 71 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 TOMM40O96008 361 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 PYY3Q5JQD4 70 aa8.52□□□□□ -1.05
CCDC88A-202ENST00000336838 TMEM170BQ5T4T1 132 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 ZNF585BQ52M93 769 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 MBNL3Q9NUK0 354 aaKnown RBP8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 COL4A6Q14031 1691 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 SIGLEC12Q96PQ1 595 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 SPANXCQ9NY87 97 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 ZNF492Q9P255 531 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 IGKV1-5P01602 117 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 WNT2P09544 360 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 ADCYAP1P18509 176 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 SAMD5Q5TGI4 173 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 IGKV1-12A0A0C4DH73 117 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 IGKV1D-12P01611 117 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 IGHV2-70P01814 119 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 A0A0G2JMM0 328 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 A0A1W2PPB8 328 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 KIR3DP1A8MWS1 328 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 DUSP14O95147 198 aaKnown RBP8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 OR9G9P0C7N8 305 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 SP9P0CG40 484 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 TMEM75Q8N9X5 138 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 LEAP2Q969E1 77 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 MESP1Q9BRJ9 268 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 PLSCR4Q9NRQ2 329 aa8.51□□□□□ -1.05
CCDC88A-202ENST00000336838 APOMO95445 188 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 IGKV1D-33P01593 117 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 IGKV1-33P01594 117 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 CSRP2Q16527 193 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 GAGE13Q4V321 117 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 FAM231DQ6ZW35 169 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 TRGV11A0A075B6L2 103 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 EPOPA6NHQ4 379 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 TMEM167AQ8TBQ9 72 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 ZNF837Q96EG3 531 aaPredicted RBP8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 IGHV3-72A0A0B4J1Y9 119 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 SYS1-DBNDD2H3BUS1 97 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 IGHV2-5P01817 119 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 FAM90A2PQ658T7 463 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 PSG8Q9UQ74 426 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 HOXA3O43365 443 aaPredicted RBP8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 WNK1Q9H4A3 2382 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 Q6P435 159 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 TMEM14BQ9NUH8 114 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 TRBV7-1A0A0A6YYK4 115 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 TRGV3P03979 118 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 GATA4P43694 442 aa8.5□□□□□ -1.05
CCDC88A-202ENST00000336838 M0R1W7 72 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 NKX2-8O15522 239 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 NUDT10Q8NFP7 164 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 FDCSPQ8NFU4 85 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 NUDT11Q96G61 164 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 CHTOPQ9Y3Y2 248 aaKnown RBP8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 LMO1P25800 156 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 CMC4P56277 68 aaPredicted RBP8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 EXPH5Q8NEV8 1989 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 RBMY1BA6NDE4 496 aaKnown RBP8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 RBMY1EA6NEQ0 496 aaKnown RBP8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 RBMY1DP0C7P1 496 aaKnown RBP8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 RBMY1A1P0DJD3 496 aaKnown RBP8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 RBMY1CP0DJD4 496 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 H7C2G1 150 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 RNF224P0DH78 156 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 EGR1P18146 543 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 KLF17Q5JT82 389 aaPredicted RBP8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 CD5LO43866 347 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 SRSF2Q01130 221 aaKnown RBP8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 KLRB1Q12918 225 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 RNASE6Q93091 150 aaKnown RBP8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 SUMO2P61956 95 aaKnown RBP8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 PEMTQ9UBM1 199 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 A0A1B0GWJ7 208 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 H3BUT2 72 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 CD55P08174 381 aa8.49□□□□□ -1.05
CCDC88A-202ENST00000336838 MEIG1Q5JSS6 88 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 PEAR1Q5VY43 1037 aaPredicted RBP8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 A0A087WV48 116 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 A8MWV9 139 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 TCRAP04437 139 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 MST1LQ2TV78 715 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 ARTNQ5T4W7 220 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 NUP35Q8NFH5 326 aa8.48□□□□□ -1.05
CCDC88A-202ENST00000336838 DLX4Q92988 240 aaPredicted RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 288.8 ms