RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 ZNF688P0C7X2 276 aa12.94□□□□□ -0.34
HDDC3-201ENST00000330334 NUP62P37198 522 aaPredicted RBP12.94□□□□□ -0.34
HDDC3-201ENST00000330334 DHRS2Q13268 280 aa12.94□□□□□ -0.34
HDDC3-201ENST00000330334 GAMTQ14353 236 aa12.94□□□□□ -0.34
HDDC3-201ENST00000330334 TMED4Q7Z7H5 227 aa12.94□□□□□ -0.34
HDDC3-201ENST00000330334 OR51G1Q8NGK1 321 aa12.94□□□□□ -0.34
HDDC3-201ENST00000330334 C11orf45Q8TAV5 145 aa12.94□□□□□ -0.34
HDDC3-201ENST00000330334 TMED3Q9Y3Q3 217 aa12.94□□□□□ -0.34
HDDC3-201ENST00000330334 OR8G2PQ6IF36 304 aa12.93□□□□□ -0.34
HDDC3-201ENST00000330334 RAB40CQ96S21 281 aa12.93□□□□□ -0.34
HDDC3-201ENST00000330334 RBM38Q9H0Z9 239 aaKnown RBP12.93□□□□□ -0.34
HDDC3-201ENST00000330334 NRN1Q9NPD7 142 aa12.93□□□□□ -0.34
HDDC3-201ENST00000330334 CCDC160A6NGH7 325 aa12.92□□□□□ -0.34
HDDC3-201ENST00000330334 MED6O75586 246 aa12.92□□□□□ -0.34
HDDC3-201ENST00000330334 SFT2D2O95562 160 aa12.92□□□□□ -0.34
HDDC3-201ENST00000330334 LY6G6CO95867 125 aa12.92□□□□□ -0.34
HDDC3-201ENST00000330334 FABP1P07148 127 aa12.92□□□□□ -0.34
HDDC3-201ENST00000330334 SNRPD3P62318 126 aaKnown RBP12.92□□□□□ -0.34
HDDC3-201ENST00000330334 SIGLEC15Q6ZMC9 328 aa12.92□□□□□ -0.34
HDDC3-201ENST00000330334 RNF125Q96EQ8 232 aa12.92□□□□□ -0.34
HDDC3-201ENST00000330334 IGKV1D-37A0A075B6S9 117 aa12.91□□□□□ -0.34
HDDC3-201ENST00000330334 ZFP92A6NM28 416 aa12.91□□□□□ -0.34
HDDC3-201ENST00000330334 KNCNA6PVL3 124 aa12.91□□□□□ -0.34
HDDC3-201ENST00000330334 ZNF705EA8MWA4 302 aaPredicted RBP12.91□□□□□ -0.34
HDDC3-201ENST00000330334 VAMP1P23763 118 aa12.91□□□□□ -0.34
HDDC3-201ENST00000330334 UBE2MP61081 183 aaKnown RBP12.91□□□□□ -0.34
HDDC3-201ENST00000330334 RAB11AP62491 216 aa12.91□□□□□ -0.34
HDDC3-201ENST00000330334 ACTL10Q5JWF8 245 aa12.91□□□□□ -0.34
HDDC3-201ENST00000330334 Q8NAQ8 132 aa12.91□□□□□ -0.34
HDDC3-201ENST00000330334 SLC35E1Q96K37 410 aa12.91□□□□□ -0.34
HDDC3-201ENST00000330334 CIB3Q96Q77 187 aaPredicted RBP12.91□□□□□ -0.34
HDDC3-201ENST00000330334 HRH4Q9H3N8 390 aa12.91□□□□□ -0.34
HDDC3-201ENST00000330334 SNRPGP15A8MWD9 76 aa12.9□□□□□ -0.34
HDDC3-201ENST00000330334 MIFP14174 115 aa12.9□□□□□ -0.34
HDDC3-201ENST00000330334 RPP30P78346 268 aaKnown RBP12.9□□□□□ -0.34
HDDC3-201ENST00000330334 PPP1R1AQ13522 171 aa12.9□□□□□ -0.34
HDDC3-201ENST00000330334 PSMG4Q5JS54 123 aa12.9□□□□□ -0.34
HDDC3-201ENST00000330334 SPANXN2Q5MJ10 180 aa12.9□□□□□ -0.34
HDDC3-201ENST00000330334 C1orf194Q5T5A4 169 aa12.9□□□□□ -0.34
HDDC3-201ENST00000330334 CSNK1G2-AS1Q8NCQ2 148 aa12.9□□□□□ -0.34
HDDC3-201ENST00000330334 TRGV9Q99603 122 aa12.9□□□□□ -0.34
HDDC3-201ENST00000330334 AGRNO00468 2067 aa12.9□□□□□ -0.34
HDDC3-201ENST00000330334 BIRC6Q9NR09 4857 aa12.89□□□□□ -0.35
HDDC3-201ENST00000330334 C4BPBP20851 252 aa12.89□□□□□ -0.35
HDDC3-201ENST00000330334 TCTAP57738 103 aa12.89□□□□□ -0.35
HDDC3-201ENST00000330334 NANOS2P60321 138 aaKnown RBP12.89□□□□□ -0.35
HDDC3-201ENST00000330334 NUTF2P61970 127 aaKnown RBP12.89□□□□□ -0.35
HDDC3-201ENST00000330334 ZNF90Q03938 601 aa12.89□□□□□ -0.35
HDDC3-201ENST00000330334 CENPSQ8N2Z9 138 aa12.89□□□□□ -0.35
HDDC3-201ENST00000330334 SRRQ9GZT4 340 aa12.89□□□□□ -0.35
HDDC3-201ENST00000330334 NAP1L6A6NFF2 107 aa12.88□□□□□ -0.35
HDDC3-201ENST00000330334 SYNGR2O43760 224 aa12.88□□□□□ -0.35
HDDC3-201ENST00000330334 CFDP00746 253 aaPredicted RBP12.88□□□□□ -0.35
HDDC3-201ENST00000330334 NKX2-1P43699 371 aaPredicted RBP12.88□□□□□ -0.35
HDDC3-201ENST00000330334 LGALS9CQ6DKI2 356 aa12.88□□□□□ -0.35
HDDC3-201ENST00000330334 THAP8Q8NA92 274 aa12.88□□□□□ -0.35
HDDC3-201ENST00000330334 C1QTNF4Q9BXJ3 329 aa12.88□□□□□ -0.35
HDDC3-201ENST00000330334 FBXL17Q9UF56 701 aa12.88□□□□□ -0.35
HDDC3-201ENST00000330334 C11orf94C9JXX5 98 aa12.87□□□□□ -0.35
HDDC3-201ENST00000330334 H3BMM0 161 aa12.87□□□□□ -0.35
HDDC3-201ENST00000330334 RBMY1A1P0DJD3 496 aaKnown RBP12.87□□□□□ -0.35
HDDC3-201ENST00000330334 RBMY1CP0DJD4 496 aa12.87□□□□□ -0.35
HDDC3-201ENST00000330334 RBMY1FQ15415 496 aaKnown RBP12.87□□□□□ -0.35
HDDC3-201ENST00000330334 PBDC1Q9BVG4 233 aa12.87□□□□□ -0.35
HDDC3-201ENST00000330334 TBC1D24Q9ULP9 559 aa12.87□□□□□ -0.35
HDDC3-201ENST00000330334 X6R8D5 127 aa12.87□□□□□ -0.35
HDDC3-201ENST00000330334 IGKV1OR2-108A0A075B7D4 117 aa12.86□□□□□ -0.35
HDDC3-201ENST00000330334 IGHV4-28A0A0C4DH34 117 aa12.86□□□□□ -0.35
HDDC3-201ENST00000330334 PRSS46E5RG02 174 aa12.86□□□□□ -0.35
HDDC3-201ENST00000330334 DEFB4AO15263 64 aa12.86□□□□□ -0.35
HDDC3-201ENST00000330334 IAPPP10997 89 aa12.86□□□□□ -0.35
HDDC3-201ENST00000330334 GGNBP1Q5YKI7 109 aa12.86□□□□□ -0.35
HDDC3-201ENST00000330334 C2CD4CQ8TF44 421 aa12.86□□□□□ -0.35
HDDC3-201ENST00000330334 CLUHP3Q96NS8 147 aa12.86□□□□□ -0.35
HDDC3-201ENST00000330334 SLC45A2Q9UMX9 530 aa12.86□□□□□ -0.35
HDDC3-201ENST00000330334 KMT2AQ03164 3969 aa12.85□□□□□ -0.35
HDDC3-201ENST00000330334 C9orf170A2RU37 121 aa12.85□□□□□ -0.35
HDDC3-201ENST00000330334 NDUFB6O95139 128 aa12.85□□□□□ -0.35
HDDC3-201ENST00000330334 HOXB5P09067 269 aa12.85□□□□□ -0.35
HDDC3-201ENST00000330334 HLA-DRB4P13762 266 aa12.85□□□□□ -0.35
HDDC3-201ENST00000330334 ID1P41134 155 aa12.85□□□□□ -0.35
HDDC3-201ENST00000330334 ID3Q02535 119 aa12.85□□□□□ -0.35
HDDC3-201ENST00000330334 SAMD13Q5VXD3 122 aa12.85□□□□□ -0.35
HDDC3-201ENST00000330334 HLA-DRB4X5D2U9 266 aa12.85□□□□□ -0.35
HDDC3-201ENST00000330334 PSMB3P49720 205 aa12.84□□□□□ -0.35
HDDC3-201ENST00000330334 LYZP61626 148 aa12.84□□□□□ -0.35
HDDC3-201ENST00000330334 BAK1Q16611 211 aa12.84□□□□□ -0.35
HDDC3-201ENST00000330334 MAGT1Q9H0U3 335 aa12.84□□□□□ -0.35
HDDC3-201ENST00000330334 WRBO00258 174 aa12.83□□□□□ -0.36
HDDC3-201ENST00000330334 SOCS3O14543 225 aa12.83□□□□□ -0.36
HDDC3-201ENST00000330334 INPP1P49441 399 aa12.83□□□□□ -0.36
HDDC3-201ENST00000330334 SPATA31B1PQ5VZV4 182 aa12.83□□□□□ -0.36
HDDC3-201ENST00000330334 TRIQKQ629K1 86 aa12.83□□□□□ -0.36
HDDC3-201ENST00000330334 WDR12Q9GZL7 423 aaKnown RBP12.83□□□□□ -0.36
HDDC3-201ENST00000330334 CLEC5AQ9NY25 188 aa12.83□□□□□ -0.36
HDDC3-201ENST00000330334 PAIP2BQ9ULR5 123 aaKnown RBP12.83□□□□□ -0.36
HDDC3-201ENST00000330334 STRAPQ9Y3F4 350 aaKnown RBP12.83□□□□□ -0.36
HDDC3-201ENST00000330334 ISLRO14498 428 aa12.82□□□□□ -0.36
HDDC3-201ENST00000330334 S100A7P31151 101 aa12.82□□□□□ -0.36
HDDC3-201ENST00000330334 OR2F1Q13607 317 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms