RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 TANC1Q9C0D5 1861 aa13.1□□□□□ -0.31
USP42-201ENST00000306177 TRAV5A0A0B4J249 113 aa13.1□□□□□ -0.31
USP42-201ENST00000306177 OR10J3Q5JRS4 329 aa13.1□□□□□ -0.31
USP42-201ENST00000306177 NEUROG1Q92886 237 aa13.1□□□□□ -0.31
USP42-201ENST00000306177 MRAP2Q96G30 205 aa13.1□□□□□ -0.31
USP42-201ENST00000306177 HEATR1Q9H583 2144 aaKnown RBP13.1□□□□□ -0.31
USP42-201ENST00000306177 PRDM13Q9H4Q3 707 aa13.1□□□□□ -0.31
USP42-201ENST00000306177 ASCL4Q6XD76 172 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 ZNF407Q9C0G0 2248 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 TRGV2A0A075B6R0 118 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 IGKV1D-17A0A075B6S4 117 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 H0YJW9 148 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 H3BRM9 83 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 ZNF474Q6S9Z5 364 aaPredicted RBP13.09□□□□□ -0.31
USP42-201ENST00000306177 STHQ8IWL8 128 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 ST6GALNAC3Q8NDV1 305 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 NRN1Q9NPD7 142 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 MYLKQ15746 1914 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 PEF1Q9UBV8 284 aaKnown RBP13.09□□□□□ -0.31
USP42-201ENST00000306177 TRAV3A0A0B4J244 114 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 M0R1W7 72 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 CACNG7P62955 275 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 HGFACQ04756 655 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 KLRD1Q13241 179 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 TSKUQ8WUA8 353 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 GNB1LQ9BYB4 327 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 TMEM242Q9NWH2 141 aa13.09□□□□□ -0.31
USP42-201ENST00000306177 NOTCH4Q99466 2003 aa13.08□□□□□ -0.31
USP42-201ENST00000306177 FER1L5A0AVI2 2057 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 A0A1B0GWJ7 208 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 ETV2O00321 342 aaPredicted RBP13.08□□□□□ -0.32
USP42-201ENST00000306177 OVOL1O14753 267 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 C15orf32Q32M92 178 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 SIGLEC15Q6ZMC9 328 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 A0A1B0GW64 132 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 LINC00473A8K010 186 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 MGST2Q99735 147 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 LINC00527Q9UJ94 153 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 ANAPC1Q9H1A4 1944 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 PSG1P11464 419 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 GNLYP22749 145 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 FBLN7Q53RD9 439 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 C5orf24Q7Z6I8 188 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 PCNTO95613 3336 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 PPBPP02775 128 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 ST20Q9HBF5 79 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 ZNF581Q9P0T4 197 aa13.08□□□□□ -0.32
USP42-201ENST00000306177 TRGV9Q99603 122 aa13.07□□□□□ -0.32
USP42-201ENST00000306177 SPOCK3Q9BQ16 436 aa13.07□□□□□ -0.32
USP42-201ENST00000306177 TTC28Q96AY4 2481 aa13.07□□□□□ -0.32
USP42-201ENST00000306177 SPATA31B1PQ5VZV4 182 aa13.07□□□□□ -0.32
USP42-201ENST00000306177 BEX4Q9NWD9 120 aaPredicted RBP13.07□□□□□ -0.32
USP42-201ENST00000306177 RNASE1P07998 156 aaKnown RBP13.07□□□□□ -0.32
USP42-201ENST00000306177 CYB5R2Q6BCY4 276 aa13.07□□□□□ -0.32
USP42-201ENST00000306177 C1QL4Q86Z23 238 aa13.07□□□□□ -0.32
USP42-201ENST00000306177 RPP25LQ8N5L8 163 aaKnown RBP13.07□□□□□ -0.32
USP42-201ENST00000306177 OR13C6PQ8NH95 151 aa13.07□□□□□ -0.32
USP42-201ENST00000306177 BUB1B-PAK6H3BSN5 160 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 ZNF585BQ52M93 769 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 SNAI2O43623 268 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 HIST1H2BKO60814 126 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 HIST1H2BJP06899 126 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 HIST1H2BOP23527 126 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 HIST1H2BBP33778 126 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 HIST1H2BDP58876 126 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 HIST1H2BCP62807 126 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 HIST2H2BEQ16778 126 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.06□□□□□ -0.32
USP42-201ENST00000306177 ATP5L2Q7Z4Y8 100 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 HIST1H2BHQ93079 126 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 ST6GALNAC6Q969X2 333 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 HIST1H2BNQ99877 126 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 HIST1H2BMQ99879 126 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 SLC25A39Q9BZJ4 359 aaPredicted RBP13.06□□□□□ -0.32
USP42-201ENST00000306177 PLXNA4Q9HCM2 1894 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 MPDZO75970 2070 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 PMS2P5A8MQ11 134 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 UNQ6494/PRO21346Q6UXR6 183 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 B4DSR2 109 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 F2Z2F3 143 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 EMP1P54849 157 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 C5orf64Q2M2E5 130 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 SEPSECSQ9HD40 501 aaKnown RBP13.06□□□□□ -0.32
USP42-201ENST00000306177 NXT2Q9NPJ8 142 aaKnown RBP13.06□□□□□ -0.32
USP42-201ENST00000306177 GSN-AS1Q9NRJ2 163 aa13.06□□□□□ -0.32
USP42-201ENST00000306177 MRPL16Q9NX20 251 aaKnown RBP13.06□□□□□ -0.32
USP42-201ENST00000306177 DNAL4O96015 105 aa13.05□□□□□ -0.32
USP42-201ENST00000306177 HBDP02042 147 aa13.05□□□□□ -0.32
USP42-201ENST00000306177 CFPP27918 469 aa13.05□□□□□ -0.32
USP42-201ENST00000306177 SRSF4Q08170 494 aaKnown RBP13.05□□□□□ -0.32
USP42-201ENST00000306177 TMEM219Q86XT9 240 aa13.05□□□□□ -0.32
USP42-201ENST00000306177 LINC00614P0C842 121 aa13.05□□□□□ -0.32
USP42-201ENST00000306177 OR5AN1Q8NGI8 311 aa13.05□□□□□ -0.32
USP42-201ENST00000306177 AGMATQ9BSE5 352 aa13.05□□□□□ -0.32
USP42-201ENST00000306177 NDUFA3O95167 84 aa13.05□□□□□ -0.32
USP42-201ENST00000306177 SRSF1Q07955 248 aaKnown RBP eCLIP13.05□□□□□ -0.32
USP42-201ENST00000306177 TRBV24-1A0A075B6N3 115 aa13.05□□□□□ -0.32
USP42-201ENST00000306177 NUDT10Q8NFP7 164 aa13.05□□□□□ -0.32
USP42-201ENST00000306177 NUDT11Q96G61 164 aa13.05□□□□□ -0.32
USP42-201ENST00000306177 MSRB2Q9Y3D2 182 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms