RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 SELENOTP62341 195 aa17.11■□□□□ 0.33
TRIM28-201ENST00000253024 KLF17Q5JT82 389 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-201ENST00000253024 MCRIP2Q9BUT9 160 aaKnown RBP17.11■□□□□ 0.33
TRIM28-201ENST00000253024 HIGD1CA8MV81 97 aa17.11■□□□□ 0.33
TRIM28-201ENST00000253024 RNASEKQ6P5S7 137 aaKnown RBP17.11■□□□□ 0.33
TRIM28-201ENST00000253024 PSMB11A5LHX3 300 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 M0R143 59 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 GPX1P07203 203 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 PAX1P15863 534 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 BRS3P32247 399 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 FOXC1Q12948 553 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 RBP4P02753 201 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 DNLZQ5SXM8 178 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 NUP35Q8NFH5 326 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 HILPDAQ9Y5L2 63 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 TCRBV4S1A1TA0A5B7 111 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 IGHV1-8P0DP01 117 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 PDPNQ86YL7 162 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 EXOC3-AS1Q8N2X6 119 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 Q8NA96 180 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 FXYD5Q96DB9 178 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 NEU1Q99519 415 aa17.1■□□□□ 0.33
TRIM28-201ENST00000253024 A0A1W2PRE2 83 aa17.09■□□□□ 0.33
TRIM28-201ENST00000253024 VWC2LB2RUY7 222 aa17.09■□□□□ 0.33
TRIM28-201ENST00000253024 NUTF2P61970 127 aaKnown RBP17.09■□□□□ 0.33
TRIM28-201ENST00000253024 TMEM177Q53S58 311 aa17.09■□□□□ 0.33
TRIM28-201ENST00000253024 SPG11Q96JI7 2443 aa17.09■□□□□ 0.33
TRIM28-201ENST00000253024 IGHV3OR16-8A0A075B7F1 116 aa17.09■□□□□ 0.33
TRIM28-201ENST00000253024 VMA21Q3ZAQ7 101 aa17.09■□□□□ 0.33
TRIM28-201ENST00000253024 TMEM167AQ8TBQ9 72 aa17.09■□□□□ 0.33
TRIM28-201ENST00000253024 TPPP3Q9BW30 176 aa17.09■□□□□ 0.33
TRIM28-201ENST00000253024 GNB1LQ9BYB4 327 aa17.09■□□□□ 0.33
TRIM28-201ENST00000253024 OSTCQ9NRP0 149 aa17.09■□□□□ 0.33
TRIM28-201ENST00000253024 ZNF586Q9NXT0 402 aa17.09■□□□□ 0.33
TRIM28-201ENST00000253024 AMY1AP04745 511 aa17.08■□□□□ 0.33
TRIM28-201ENST00000253024 COMPP49747 757 aaPredicted RBP17.08■□□□□ 0.33
TRIM28-201ENST00000253024 INSIG2Q9Y5U4 225 aa17.08■□□□□ 0.33
TRIM28-201ENST00000253024 PGLYRP4Q96LB8 373 aa17.08■□□□□ 0.32
TRIM28-201ENST00000253024 ZNF138P52744 262 aa17.07■□□□□ 0.32
TRIM28-201ENST00000253024 TCF15Q12870 199 aa17.07■□□□□ 0.32
TRIM28-201ENST00000253024 Q56UQ5 140 aa17.07■□□□□ 0.32
TRIM28-201ENST00000253024 Q6ZVH6 145 aa17.07■□□□□ 0.32
TRIM28-201ENST00000253024 NUP37Q8NFH4 326 aa17.07■□□□□ 0.32
TRIM28-201ENST00000253024 VPS13CQ709C8 3753 aa17.07■□□□□ 0.32
TRIM28-201ENST00000253024 IGHV1-69-2A0A0G2JMI3 117 aa17.07■□□□□ 0.32
TRIM28-201ENST00000253024 BPIFB3P59826 476 aa17.07■□□□□ 0.32
TRIM28-201ENST00000253024 CLEC5AQ9NY25 188 aa17.07■□□□□ 0.32
TRIM28-201ENST00000253024 ONECUT1Q9UBC0 465 aa17.07■□□□□ 0.32
TRIM28-201ENST00000253024 RPL27AP46776 148 aaKnown RBP17.07■□□□□ 0.32
TRIM28-201ENST00000253024 PAFAH1B2P68402 229 aa17.07■□□□□ 0.32
TRIM28-201ENST00000253024 ST6GALNAC6Q969X2 333 aa17.07■□□□□ 0.32
TRIM28-201ENST00000253024 KIR2DL5BA0A0G2JN68 375 aa17.06■□□□□ 0.32
TRIM28-201ENST00000253024 KIR2DL5BA0A0G2JPC4 375 aa17.06■□□□□ 0.32
TRIM28-201ENST00000253024 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-201ENST00000253024 C3orf79P0CE67 100 aa17.06■□□□□ 0.32
TRIM28-201ENST00000253024 SUB1P53999 127 aaKnown RBP eCLIP17.06■□□□□ 0.323e-7■■■□□ 15.1
TRIM28-201ENST00000253024 KIR2DL5AQ8N109 375 aa17.06■□□□□ 0.32
TRIM28-201ENST00000253024 TSKUQ8WUA8 353 aa17.06■□□□□ 0.32
TRIM28-201ENST00000253024 C17orf77Q96MU5 243 aa17.06■□□□□ 0.32
TRIM28-201ENST00000253024 IGLC7A0M8Q6 106 aa17.06■□□□□ 0.32
TRIM28-201ENST00000253024 NBEAP1P0C6P0 100 aa17.06■□□□□ 0.32
TRIM28-201ENST00000253024 MMDQ15546 238 aa17.06■□□□□ 0.32
TRIM28-201ENST00000253024 TMEM183BQ1AE95 376 aa17.06■□□□□ 0.32
TRIM28-201ENST00000253024 SPATA45Q537H7 98 aa17.06■□□□□ 0.32
TRIM28-201ENST00000253024 CIARTQ8N365 385 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-201ENST00000253024 IGHV3-35A0A0C4DH35 117 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 MUC21A0A0G2JKD1 596 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 MUC21A0A140T8X8 626 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 CNIH1O95406 144 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 RPL19P84098 196 aaKnown RBP17.05■□□□□ 0.32
TRIM28-201ENST00000253024 MEF2CQ06413 473 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-201ENST00000253024 TBR1Q16650 682 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 MUC21Q5SSG8 566 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 PNKDQ8N490 385 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 BEND2Q8NDZ0 799 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 CACNG8Q8WXS5 425 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 TMEM186Q96B77 213 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 IGHV3-23P01764 117 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 TDGF1P3P51864 188 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 C11orf42Q8N5U0 333 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 VSTM2AQ8TAG5 236 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 LINC00574Q9H8X3 128 aa17.05■□□□□ 0.32
TRIM28-201ENST00000253024 SHISA9B4DS77 424 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 HSBP1O75506 76 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 CSN3P07498 182 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 MRGPRG-AS1Q2M3A8 158 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 SPACA3Q8IXA5 215 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 KCNS1Q96KK3 526 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 TMEM133Q9H2Q1 129 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 SMIM27A0A1W2PRY6 76 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 C18orf32Q8TCD1 76 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 IGHV2-26A0A0B4J1V2 119 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 IZUMO1RA6ND01 250 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 ZNF324O75467 553 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-201ENST00000253024 ARF6P62330 175 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 KLRD1Q13241 179 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 PRNTQ86SH4 94 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 BCL6BQ8N143 479 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-201ENST00000253024 OR1L4Q8NGR5 311 aa17.04■□□□□ 0.32
TRIM28-201ENST00000253024 EPDR1Q9UM22 224 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms