RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 PUS1Q9Y606 427 aaKnown RBP eCLIP14.66□□□□□ -0.06
SHKBP1-221ENST00000599833 INMT-MINDY4F8WBC2 141 aa14.65□□□□□ -0.06
SHKBP1-221ENST00000599833 H3BP45 60 aa14.65□□□□□ -0.06
SHKBP1-221ENST00000599833 LY86O95711 162 aa14.65□□□□□ -0.06
SHKBP1-221ENST00000599833 GPX4P36969 197 aaPredicted RBP14.65□□□□□ -0.06
SHKBP1-221ENST00000599833 DEFA1P59665 94 aa14.65□□□□□ -0.06
SHKBP1-221ENST00000599833 DEFA3P59666 94 aa14.65□□□□□ -0.06
SHKBP1-221ENST00000599833 SMIM8Q96KF7 97 aa14.65□□□□□ -0.06
SHKBP1-221ENST00000599833 C20orf24Q9BUV8 137 aa14.65□□□□□ -0.06
SHKBP1-221ENST00000599833 IGKV1OR2-108A0A075B7D4 117 aa14.64□□□□□ -0.07
SHKBP1-221ENST00000599833 IGHV7-4-1A0A0J9YVY3 117 aa14.64□□□□□ -0.07
SHKBP1-221ENST00000599833 SNRPGP15A8MWD9 76 aa14.64□□□□□ -0.07
SHKBP1-221ENST00000599833 CHEK1O14757 476 aa14.64□□□□□ -0.07
SHKBP1-221ENST00000599833 SSSCA1O60232 199 aa14.64□□□□□ -0.07
SHKBP1-221ENST00000599833 CCNKO75909 580 aa14.64□□□□□ -0.07
SHKBP1-221ENST00000599833 APOHP02749 345 aaPredicted RBP14.64□□□□□ -0.07
SHKBP1-221ENST00000599833 IFNA4P05014 189 aa14.64□□□□□ -0.07
SHKBP1-221ENST00000599833 TMEM14EPQ6UXP3 125 aa14.64□□□□□ -0.07
SHKBP1-221ENST00000599833 LILRB2Q8N423 598 aa14.64□□□□□ -0.07
SHKBP1-221ENST00000599833 DYNLRB2Q8TF09 96 aa14.64□□□□□ -0.07
SHKBP1-221ENST00000599833 SMPXQ9UHP9 88 aa14.64□□□□□ -0.07
SHKBP1-221ENST00000599833 TENM3Q9P273 2699 aa14.64□□□□□ -0.07
SHKBP1-221ENST00000599833 TRAV30A0A087WSZ9 112 aa14.63□□□□□ -0.07
SHKBP1-221ENST00000599833 PRAF2O60831 178 aa14.63□□□□□ -0.07
SHKBP1-221ENST00000599833 OR10J1P30954 320 aa14.63□□□□□ -0.07
SHKBP1-221ENST00000599833 YPEL3P61236 119 aaPredicted RBP14.63□□□□□ -0.07
SHKBP1-221ENST00000599833 SPANXN5Q5MJ07 72 aa14.63□□□□□ -0.07
SHKBP1-221ENST00000599833 FAM90A2PQ658T7 463 aa14.63□□□□□ -0.07
SHKBP1-221ENST00000599833 ETFRF1Q6IPR1 90 aa14.63□□□□□ -0.07
SHKBP1-221ENST00000599833 OR1S2Q8NGQ3 325 aa14.63□□□□□ -0.07
SHKBP1-221ENST00000599833 VSIRQ9H7M9 311 aa14.63□□□□□ -0.07
SHKBP1-221ENST00000599833 C19orf73Q9NVV2 129 aa14.63□□□□□ -0.07
SHKBP1-221ENST00000599833 C7orf66A4D0T2 115 aa14.62□□□□□ -0.07
SHKBP1-221ENST00000599833 DEFB121Q5J5C9 76 aa14.62□□□□□ -0.07
SHKBP1-221ENST00000599833 THAP8Q8NA92 274 aa14.62□□□□□ -0.07
SHKBP1-221ENST00000599833 ACY3Q96HD9 319 aa14.62□□□□□ -0.07
SHKBP1-221ENST00000599833 C2orf50Q96LR7 162 aa14.62□□□□□ -0.07
SHKBP1-221ENST00000599833 B9D2Q9BPU9 175 aa14.62□□□□□ -0.07
SHKBP1-221ENST00000599833 GSKIPQ9P0R6 139 aa14.62□□□□□ -0.07
SHKBP1-221ENST00000599833 IGHV3-49A0A0A0MS15 119 aa14.61□□□□□ -0.07
SHKBP1-221ENST00000599833 A8MZ25 164 aa14.61□□□□□ -0.07
SHKBP1-221ENST00000599833 K7EPK0 472 aa14.61□□□□□ -0.07
SHKBP1-221ENST00000599833 YIF1AO95070 293 aa14.61□□□□□ -0.07
SHKBP1-221ENST00000599833 SCGB1D2O95969 90 aa14.61□□□□□ -0.07
SHKBP1-221ENST00000599833 CD7P09564 240 aa14.61□□□□□ -0.07
SHKBP1-221ENST00000599833 TAS2R30P59541 319 aa14.61□□□□□ -0.07
SHKBP1-221ENST00000599833 RAB11AP62491 216 aa14.61□□□□□ -0.07
SHKBP1-221ENST00000599833 RNF2Q99496 336 aa14.61□□□□□ -0.07
SHKBP1-221ENST00000599833 PSENENQ9NZ42 101 aa14.61□□□□□ -0.07
SHKBP1-221ENST00000599833 STRAPQ9Y3F4 350 aaKnown RBP14.61□□□□□ -0.07
SHKBP1-221ENST00000599833 U3KQE9 123 aa14.61□□□□□ -0.07
SHKBP1-221ENST00000599833 TRAV14DV4A0A0A6YYC5 116 aa14.6□□□□□ -0.07
SHKBP1-221ENST00000599833 TRAV25A0A0B4J276 109 aa14.6□□□□□ -0.07
SHKBP1-221ENST00000599833 TSC22D2O75157 780 aa14.6□□□□□ -0.07
SHKBP1-221ENST00000599833 TOMM40O96008 361 aa14.6□□□□□ -0.07
SHKBP1-221ENST00000599833 CRYBB3P26998 211 aa14.6□□□□□ -0.07
SHKBP1-221ENST00000599833 ARL16Q0P5N6 197 aa14.6□□□□□ -0.07
SHKBP1-221ENST00000599833 ST8SIA2Q92186 375 aa14.6□□□□□ -0.07
SHKBP1-221ENST00000599833 RAB40CQ96S21 281 aa14.6□□□□□ -0.07
SHKBP1-221ENST00000599833 RHPN1-AS1Q9BWJ2 59 aa14.6□□□□□ -0.07
SHKBP1-221ENST00000599833 SMAD5-AS1Q9Y6J3 95 aa14.6□□□□□ -0.07
SHKBP1-221ENST00000599833 IGHV3OR16-13A0A075B7E8 117 aa14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 IGHV3-74A0A0B4J1X5 117 aa14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 C5orf51A6NDU8 294 aa14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 FAM25EA8MYX2 175 aa14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 TSPAN4O14817 238 aa14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 PTTG1O95997 202 aa14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 IGHV4-30-4P0DP06 118 aa14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 RPP30P78346 268 aaKnown RBP14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 ZNF90Q03938 601 aa14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 USF2Q15853 346 aaPredicted RBP14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 GSG1LQ6UXU4 331 aa14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 WFDC10AQ9H1F0 79 aa14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 GPN1Q9HCN4 374 aaPredicted RBP14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 NBEAL2Q6ZNJ1 2754 aa14.59□□□□□ -0.07
SHKBP1-221ENST00000599833 STAB2Q8WWQ8 2551 aa14.58□□□□□ -0.08
SHKBP1-221ENST00000599833 SIX6O95475 246 aa14.58□□□□□ -0.08
SHKBP1-221ENST00000599833 PSG1P11464 419 aa14.58□□□□□ -0.08
SHKBP1-221ENST00000599833 H2BFSP57053 126 aa14.58□□□□□ -0.08
SHKBP1-221ENST00000599833 DCTN2Q13561 401 aaKnown RBP14.58□□□□□ -0.08
SHKBP1-221ENST00000599833 ACOT7LQ6ZUV0 252 aa14.58□□□□□ -0.08
SHKBP1-221ENST00000599833 SLC35E1Q96K37 410 aa14.58□□□□□ -0.08
SHKBP1-221ENST00000599833 FRMD6-AS1P0C7T7 363 aa14.57□□□□□ -0.08
SHKBP1-221ENST00000599833 METTL15P1P0C7V9 234 aa14.57□□□□□ -0.08
SHKBP1-221ENST00000599833 RAB32Q13637 225 aa14.57□□□□□ -0.08
SHKBP1-221ENST00000599833 LINC00322Q6ZN03 302 aaPredicted RBP14.57□□□□□ -0.08
SHKBP1-221ENST00000599833 STPG3Q8N7X2 389 aa14.57□□□□□ -0.08
SHKBP1-221ENST00000599833 TRGV9Q99603 122 aa14.57□□□□□ -0.08
SHKBP1-221ENST00000599833 NEURL2Q9BR09 285 aa14.57□□□□□ -0.08
SHKBP1-221ENST00000599833 GINS3Q9BRX5 216 aa14.57□□□□□ -0.08
SHKBP1-221ENST00000599833 PAIP2BQ9ULR5 123 aaKnown RBP14.57□□□□□ -0.08
SHKBP1-221ENST00000599833 LSM5Q9Y4Y9 91 aaKnown RBP14.57□□□□□ -0.08
SHKBP1-221ENST00000599833 GOSR2O14653 212 aa14.56□□□□□ -0.08
SHKBP1-221ENST00000599833 CD81P60033 236 aa14.56□□□□□ -0.08
SHKBP1-221ENST00000599833 GUCA2BQ16661 112 aa14.56□□□□□ -0.08
SHKBP1-221ENST00000599833 TMEM182Q6ZP80 229 aaPredicted RBP14.56□□□□□ -0.08
SHKBP1-221ENST00000599833 SPAG8Q99932 426 aaPredicted RBP14.56□□□□□ -0.08
SHKBP1-221ENST00000599833 IGHV3-66A0A0C4DH42 116 aa14.55□□□□□ -0.08
SHKBP1-221ENST00000599833 IL4P05112 153 aa14.55□□□□□ -0.08
SHKBP1-221ENST00000599833 RD3LP0DJH9 198 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms