RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 TEX13DA0A0J9YY54 714 aaPredicted RBP9.92□□□□□ -0.82
TRIM28-211ENST00000597968 GSTZ1O43708 216 aaPredicted RBP9.92□□□□□ -0.82
TRIM28-211ENST00000597968 IGKV1-17P01599 117 aa9.92□□□□□ -0.82
TRIM28-211ENST00000597968 NUP62P37198 522 aaPredicted RBP9.92□□□□□ -0.82
TRIM28-211ENST00000597968 ATP5IP56385 69 aaPredicted RBP9.92□□□□□ -0.82
TRIM28-211ENST00000597968 NANOS2P60321 138 aaKnown RBP9.92□□□□□ -0.82
TRIM28-211ENST00000597968 NUTF2P61970 127 aaKnown RBP9.92□□□□□ -0.82
TRIM28-211ENST00000597968 LEMD1Q68G75 181 aa9.92□□□□□ -0.82
TRIM28-211ENST00000597968 Q6ZRM9 215 aa9.92□□□□□ -0.82
TRIM28-211ENST00000597968 Q8NAQ8 132 aa9.92□□□□□ -0.82
TRIM28-211ENST00000597968 DYNC2LI1Q8TCX1 351 aa9.92□□□□□ -0.82
TRIM28-211ENST00000597968 GLYATL2Q8WU03 294 aa9.92□□□□□ -0.82
TRIM28-211ENST00000597968 IL22RA2Q969J5 263 aa9.92□□□□□ -0.82
TRIM28-211ENST00000597968 DIRAS2Q96HU8 199 aa9.92□□□□□ -0.82
TRIM28-211ENST00000597968 C1QTNF4Q9BXJ3 329 aa9.92□□□□□ -0.82
TRIM28-211ENST00000597968 VPS13DQ5THJ4 4388 aa9.92□□□□□ -0.82
TRIM28-211ENST00000597968 DNAH10Q8IVF4 4471 aa9.91□□□□□ -0.82
TRIM28-211ENST00000597968 DISC1C4P0D8 188 aa9.91□□□□□ -0.82
TRIM28-211ENST00000597968 CTDSPLO15194 276 aa9.91□□□□□ -0.82
TRIM28-211ENST00000597968 HNRNPCP07910 306 aaKnown RBP eCLIP9.91□□□□□ -0.82
TRIM28-211ENST00000597968 IGLC1P0CG04 106 aa9.91□□□□□ -0.82
TRIM28-211ENST00000597968 IL18Q14116 193 aa9.91□□□□□ -0.82
TRIM28-211ENST00000597968 MLANAQ16655 118 aa9.91□□□□□ -0.82
TRIM28-211ENST00000597968 STXBP6Q8NFX7 210 aa9.91□□□□□ -0.82
TRIM28-211ENST00000597968 PRRT1Q99946 306 aa9.91□□□□□ -0.82
TRIM28-211ENST00000597968 NAA60Q9H7X0 242 aa9.91□□□□□ -0.82
TRIM28-211ENST00000597968 HEYLQ9NQ87 328 aaPredicted RBP9.91□□□□□ -0.82
TRIM28-211ENST00000597968 FBXL17Q9UF56 701 aa9.91□□□□□ -0.82
TRIM28-211ENST00000597968 PFDN2Q9UHV9 154 aa9.91□□□□□ -0.82
TRIM28-211ENST00000597968 TMEM56-RWDD3S4R434 201 aa9.91□□□□□ -0.82
TRIM28-211ENST00000597968 IGHV3-66A0A0C4DH42 116 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 OR5AC1P0C628 307 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 SNRPD3P62318 126 aaKnown RBP9.9□□□□□ -0.82
TRIM28-211ENST00000597968 PRSS54Q6PEW0 395 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 C16orf54Q6UWD8 224 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 RPP25LQ8N5L8 163 aaKnown RBP9.9□□□□□ -0.82
TRIM28-211ENST00000597968 FAM24BQ8N5W8 94 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 SLC24A4Q8NFF2 622 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 OR4C16Q8NGL9 310 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 LHFPL5Q8TAF8 219 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 RAB2BQ8WUD1 216 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 SMIM4Q8WVI0 70 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 SCGB3A2Q96PL1 93 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 PRR13Q9NZ81 148 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 MRPL36Q9P0J6 103 aaKnown RBP9.9□□□□□ -0.82
TRIM28-211ENST00000597968 GPR132Q9UNW8 380 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 KCNIP3Q9Y2W7 256 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 U3KQ87 197 aa9.9□□□□□ -0.82
TRIM28-211ENST00000597968 TRAV10A0A0B4J240 114 aa9.89□□□□□ -0.83
TRIM28-211ENST00000597968 CRYM-AS1A6NIL9 109 aa9.89□□□□□ -0.83
TRIM28-211ENST00000597968 GIG44P09565 113 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-211ENST00000597968 AKAIN1P0CW23 69 aa9.89□□□□□ -0.83
TRIM28-211ENST00000597968 OR10J1P30954 320 aa9.89□□□□□ -0.83
TRIM28-211ENST00000597968 TMBIM6P55061 237 aa9.89□□□□□ -0.83
TRIM28-211ENST00000597968 SELENOHQ8IZQ5 122 aaKnown RBP9.89□□□□□ -0.83
TRIM28-211ENST00000597968 GLMPQ8WWB7 406 aa9.89□□□□□ -0.83
TRIM28-211ENST00000597968 CCDC59Q9P031 241 aaKnown RBP9.89□□□□□ -0.83
TRIM28-211ENST00000597968 CEBPZOSA8MTT3 80 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 BUB3O43684 328 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 TOMM40O96008 361 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 ZNF688P0C7X2 276 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 RND2P52198 227 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 DHRS2Q13268 280 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 TIGITQ495A1 244 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 NMSQ5H8A3 153 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 CSNK1G2-AS1Q8NCQ2 148 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 OR51S1Q8NGJ8 323 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 GPR146Q96CH1 333 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 BCL7BQ9BQE9 202 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 SLIRPQ9GZT3 109 aaKnown RBP9.88□□□□□ -0.83
TRIM28-211ENST00000597968 NRN1Q9NPD7 142 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 CACNG5Q9UF02 275 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 TBC1D24Q9ULP9 559 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 APLNQ9ULZ1 77 aa9.88□□□□□ -0.83
TRIM28-211ENST00000597968 IGHV4-28A0A0C4DH34 117 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 H3BMQ9 156 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 DEDDO75618 318 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 NXPH3O95157 252 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 RD3LP0DJH9 198 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 SULT1A3P0DMM9 295 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 SULT1A4P0DMN0 295 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 NPY1RP25929 384 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 TNFSF8P32971 234 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 CCR6P51684 374 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 SRPXP78539 464 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 TMEM268Q5VZI3 342 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 OR8G2PQ6IF36 304 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 RAB40CQ96S21 281 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 SOSTQ9BQB4 213 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 RNF126Q9BV68 326 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 SCP2D1Q9UJQ7 156 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 X6R8D5 127 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 HECTD4Q9Y4D8 3996 aa9.87□□□□□ -0.83
TRIM28-211ENST00000597968 DNAH6Q9C0G6 4158 aa9.86□□□□□ -0.83
TRIM28-211ENST00000597968 A0A0B4J2A0 478 aa9.86□□□□□ -0.83
TRIM28-211ENST00000597968 ANKRD20A5PA0PJZ0 165 aa9.86□□□□□ -0.83
TRIM28-211ENST00000597968 IGLL5B9A064 214 aa9.86□□□□□ -0.83
TRIM28-211ENST00000597968 IL4P05112 153 aa9.86□□□□□ -0.83
TRIM28-211ENST00000597968 RBMY1A1P0DJD3 496 aaKnown RBP9.86□□□□□ -0.83
TRIM28-211ENST00000597968 RBMY1CP0DJD4 496 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms