RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 FABP1P07148 127 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 OR10J1P30954 320 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 CDX1P47902 265 aaPredicted RBP8.33□□□□□ -1.08
SS18-213ENST00000579640 SPSB3Q6PJ21 355 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 LCNL1Q6ZST4 164 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 BAP18Q8IXM2 172 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 ZNF709Q8N972 641 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 GNPNAT1Q96EK6 184 aaPredicted RBP8.33□□□□□ -1.08
SS18-213ENST00000579640 CCDC140Q96MF4 163 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 GINS3Q9BRX5 216 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 TIMM9Q9Y5J7 89 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 S4R3C0 116 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 TCRBV4S1A1TA0A5B7 111 aa8.32□□□□□ -1.08
SS18-213ENST00000579640 F8W735 103 aaPredicted RBP8.32□□□□□ -1.08
SS18-213ENST00000579640 NUPL2O15504 423 aaKnown RBP8.32□□□□□ -1.08
SS18-213ENST00000579640 IGLC1P0CG04 106 aa8.32□□□□□ -1.08
SS18-213ENST00000579640 CAMLGP49069 296 aa8.32□□□□□ -1.08
SS18-213ENST00000579640 SELENOTP62341 195 aa8.32□□□□□ -1.08
SS18-213ENST00000579640 EIF5AL1Q6IS14 154 aaKnown RBP8.32□□□□□ -1.08
SS18-213ENST00000579640 PRIMA1Q86XR5 153 aa8.32□□□□□ -1.08
SS18-213ENST00000579640 HSD17B11Q8NBQ5 300 aa8.32□□□□□ -1.08
SS18-213ENST00000579640 ST8SIA2Q92186 375 aa8.32□□□□□ -1.08
SS18-213ENST00000579640 MGST2Q99735 147 aa8.32□□□□□ -1.08
SS18-213ENST00000579640 PSMG3Q9BT73 122 aaPredicted RBP8.32□□□□□ -1.08
SS18-213ENST00000579640 NPCDR1Q9BY65 106 aa8.32□□□□□ -1.08
SS18-213ENST00000579640 JMJD1CQ15652 2540 aa8.32□□□□□ -1.08
SS18-213ENST00000579640 IGKV1D-37A0A075B6S9 117 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 IGKV1OR2-108A0A075B7D4 117 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 AGPAT2O15120 278 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 TGOLN2O43493 480 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 IGHV3-11P01762 117 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 IGHV3-23P01764 117 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 CLEC3BP05452 202 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 LGALS1P09382 135 aaKnown RBP8.31□□□□□ -1.08
SS18-213ENST00000579640 ATP6V0CP27449 155 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 GPR183P32249 361 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 YPEL3P61236 119 aaPredicted RBP8.31□□□□□ -1.08
SS18-213ENST00000579640 TCTEX1D4Q5JR98 221 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 CLEC19AQ6UXS0 136 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 CYP2G1PQ6ZSU1 146 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 NF1P21359 2839 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 OR2T8A6NH00 312 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 CFDP00746 253 aaPredicted RBP8.31□□□□□ -1.08
SS18-213ENST00000579640 IGKV1-17P01599 117 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 CTSGP08311 255 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 RPL29P47914 159 aaKnown RBP8.31□□□□□ -1.08
SS18-213ENST00000579640 RUNX1Q01196 453 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 KRTAP21-3Q3LHN1 58 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 C4orf3Q8WVX3 66 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 PHYHIPLQ96FC7 376 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 GGTLC1Q9BX51 225 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 PEF1Q9UBV8 284 aaKnown RBP8.31□□□□□ -1.08
SS18-213ENST00000579640 SLC45A2Q9UMX9 530 aa8.31□□□□□ -1.08
SS18-213ENST00000579640 TSSC4Q9Y5U2 329 aaPredicted RBP8.31□□□□□ -1.08
SS18-213ENST00000579640 TOMM40O96008 361 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 SEC11BP0C7V7 166 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 SPP1P10451 314 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 CD28P10747 220 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 ARL3P36405 182 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 SERF2P84101 59 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 RELQ04864 619 aaPredicted RBP8.3□□□□□ -1.08
SS18-213ENST00000579640 KRTAP24-1Q3LI83 254 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 TIGITQ495A1 244 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 AWAT1Q58HT5 328 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 KHDC1LQ5JSQ8 128 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 BPIFCQ8NFQ6 507 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 OR2G3Q8NGZ4 309 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 RSG1Q9BU20 258 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 GNB4Q9HAV0 340 aa8.3□□□□□ -1.08
SS18-213ENST00000579640 GGCTO75223 188 aaKnown RBP8.29□□□□□ -1.08
SS18-213ENST00000579640 ADMP35318 185 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 ZNF616Q08AN1 781 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 ZNF600Q6ZNG1 722 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 Q8WTZ3 238 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 TMEM158Q8WZ71 300 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 SLC25A32Q9H2D1 315 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 PXMP4Q9Y6I8 212 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 ANKRD34BA5PLL1 514 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 I3L521 148 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 TSPAN15O95858 294 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 HSPB1P04792 205 aaKnown RBP8.29□□□□□ -1.08
SS18-213ENST00000579640 RD3LP0DJH9 198 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 B2MP61769 119 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 PRR20EP86478 221 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 PRR20CP86479 221 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 PRR20DP86480 221 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 PRR20BP86481 221 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 PRR20AP86496 221 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 ZNF90Q03938 601 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 PXDC1Q5TGL8 231 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 Q6ZRG5 221 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 STPG3Q8N7X2 389 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 OR5B12Q96R08 314 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 CITED2Q99967 270 aaPredicted RBP8.29□□□□□ -1.08
SS18-213ENST00000579640 CHRDL1Q9BU40 450 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 C19orf24Q9BVV8 132 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 SLC39A9Q9NUM3 307 aa8.29□□□□□ -1.08
SS18-213ENST00000579640 NUDT19A8MXV4 375 aa8.28□□□□□ -1.08
SS18-213ENST00000579640 PPP5D1E7EU14 171 aa8.28□□□□□ -1.08
SS18-213ENST00000579640 OR2C1O95371 312 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 833.4 ms