RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 DIRC3C9JPN6 131 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 J3QR89 54 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 ZNF134P52741 427 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 LURAP1LQ8IV03 231 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 OR5R1Q8NH85 324 aa12.3□□□□□ -0.44
CUX1-214ENST00000550008 SMIM17P0DL12 118 aa12.29□□□□□ -0.44
CUX1-214ENST00000550008 RIGQ13278 110 aa12.29□□□□□ -0.44
CUX1-214ENST00000550008 CBLN4Q9NTU7 201 aa12.29□□□□□ -0.44
CUX1-214ENST00000550008 DYSFO75923 2080 aa12.29□□□□□ -0.44
CUX1-214ENST00000550008 VENTXO95231 258 aa12.29□□□□□ -0.44
CUX1-214ENST00000550008 OR8A1Q8NGG7 326 aa12.29□□□□□ -0.44
CUX1-214ENST00000550008 IGHV2-26A0A0B4J1V2 119 aa12.29□□□□□ -0.44
CUX1-214ENST00000550008 LMO1P25800 156 aa12.29□□□□□ -0.44
CUX1-214ENST00000550008 IL15RAQ13261 267 aa12.29□□□□□ -0.44
CUX1-214ENST00000550008 COL5A1-AS1Q5SY13 56 aa12.29□□□□□ -0.44
CUX1-214ENST00000550008 CACNG8Q8WXS5 425 aa12.29□□□□□ -0.44
CUX1-214ENST00000550008 HIST1H2BKO60814 126 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 HIST1H2BJP06899 126 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 HIST1H2BOP23527 126 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 HIST1H2BBP33778 126 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 HIST1H2BDP58876 126 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 HIST1H2BCP62807 126 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 HIST2H2BEQ16778 126 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.28□□□□□ -0.44
CUX1-214ENST00000550008 DPF1Q92782 380 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 HIST1H2BHQ93079 126 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 HIST1H2BNQ99877 126 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 HIST1H2BMQ99879 126 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 FBXL7Q9UJT9 491 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 MRPL32Q9BYC8 188 aaKnown RBP12.28□□□□□ -0.44
CUX1-214ENST00000550008 DKK4Q9UBT3 224 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 CDH23Q9H251 3354 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 PEX7O00628 323 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 OR2T8A6NH00 312 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 TCF15Q12870 199 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 C19orf24Q9BVV8 132 aa12.28□□□□□ -0.44
CUX1-214ENST00000550008 IGHV3-11P01762 117 aa12.27□□□□□ -0.44
CUX1-214ENST00000550008 PRSS1P07477 247 aa12.27□□□□□ -0.44
CUX1-214ENST00000550008 COX19Q49B96 90 aa12.27□□□□□ -0.44
CUX1-214ENST00000550008 C16orf92Q96LL3 132 aa12.27□□□□□ -0.44
CUX1-214ENST00000550008 NAV2Q8IVL1 2488 aa12.27□□□□□ -0.44
CUX1-214ENST00000550008 BMPR1BO00238 502 aa12.27□□□□□ -0.45
CUX1-214ENST00000550008 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.27□□□□□ -0.45
CUX1-214ENST00000550008 CCL19Q99731 98 aa12.27□□□□□ -0.45
CUX1-214ENST00000550008 C21orf62Q9NYP8 219 aa12.27□□□□□ -0.45
CUX1-214ENST00000550008 TMEM189A5PLL7 270 aa12.27□□□□□ -0.45
CUX1-214ENST00000550008 THBDP07204 575 aa12.27□□□□□ -0.45
CUX1-214ENST00000550008 NEU4Q8WWR8 484 aaPredicted RBP12.27□□□□□ -0.45
CUX1-214ENST00000550008 USP9YO00507 2555 aaPredicted RBP12.27□□□□□ -0.45
CUX1-214ENST00000550008 A0A087WWC5 75 aa12.26□□□□□ -0.45
CUX1-214ENST00000550008 NBR2O15453 112 aa12.26□□□□□ -0.45
CUX1-214ENST00000550008 IGLV1-44P01699 117 aa12.26□□□□□ -0.45
CUX1-214ENST00000550008 AREGP15514 252 aa12.26□□□□□ -0.45
CUX1-214ENST00000550008 ARPC1AQ92747 370 aa12.26□□□□□ -0.45
CUX1-214ENST00000550008 SH2D7A6NKC9 451 aaPredicted RBP12.26□□□□□ -0.45
CUX1-214ENST00000550008 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.26□□□□□ -0.45
CUX1-214ENST00000550008 HLA-DQA1P01909 254 aa12.26□□□□□ -0.45
CUX1-214ENST00000550008 GPX4P36969 197 aaPredicted RBP12.26□□□□□ -0.45
CUX1-214ENST00000550008 C11orf53Q8IXP5 236 aa12.26□□□□□ -0.45
CUX1-214ENST00000550008 AGMATQ9BSE5 352 aa12.26□□□□□ -0.45
CUX1-214ENST00000550008 TUBA4BQ9H853 241 aa12.26□□□□□ -0.45
CUX1-214ENST00000550008 H0YJW9 148 aa12.26□□□□□ -0.45
CUX1-214ENST00000550008 K7ENP7 123 aa12.26□□□□□ -0.45
CUX1-214ENST00000550008 ATP5IP56385 69 aaPredicted RBP12.26□□□□□ -0.45
CUX1-214ENST00000550008 TWIST1Q15672 202 aa12.26□□□□□ -0.45
CUX1-214ENST00000550008 RNASEH2CQ8TDP1 164 aaKnown RBP12.26□□□□□ -0.45
CUX1-214ENST00000550008 STAG3L2P0CL84 134 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 STAG3L3P0CL85 134 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 GRNP28799 593 aaKnown RBP12.25□□□□□ -0.45
CUX1-214ENST00000550008 PDLIM4P50479 330 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 HAPLN4Q86UW8 402 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 PIMREGQ9BSJ6 248 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.25□□□□□ -0.45
CUX1-214ENST00000550008 SPANXN1Q5VSR9 72 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 IGFL3Q6UXB1 125 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 SLC25A48Q6ZT89 311 aaKnown RBP12.25□□□□□ -0.45
CUX1-214ENST00000550008 XIRP2A4UGR9 3374 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 MT-ND6P03923 174 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 COX6B1P14854 86 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 DIAPH2-AS1Q14236 149 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 DMRTA1Q5VZB9 504 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 FAM19A2Q8N3H0 131 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 METTL26Q96S19 204 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 SSBP4Q9BWG4 385 aaPredicted RBP12.25□□□□□ -0.45
CUX1-214ENST00000550008 TRIOO75962 3097 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 IGKV3-20P01619 116 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 RPL7P18124 248 aaKnown RBP12.25□□□□□ -0.45
CUX1-214ENST00000550008 GNLYP22749 145 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 CEACAM8P31997 349 aaPredicted RBP12.25□□□□□ -0.45
CUX1-214ENST00000550008 MAS1LP35410 378 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 CLEC19AQ6UXS0 136 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 C19orf35Q6ZS72 473 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 ZNF738Q8NE65 137 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 C7orf69Q9H7B7 122 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 IL36BQ9NZH7 164 aa12.25□□□□□ -0.45
CUX1-214ENST00000550008 MGPP08493 103 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 RELQ04864 619 aaPredicted RBP12.24□□□□□ -0.45
CUX1-214ENST00000550008 TMEM78Q5T7P6 136 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 TMEM208Q9BTX3 173 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 C2CD3Q4AC94 2353 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms