RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 FABP1P07148 127 aa13.02□□□□□ -0.33
COL4A1-204ENST00000543140 CRYGCP07315 174 aa13.02□□□□□ -0.33
COL4A1-204ENST00000543140 PRTN3P24158 256 aa13.02□□□□□ -0.33
COL4A1-204ENST00000543140 HES1Q14469 280 aa13.02□□□□□ -0.33
COL4A1-204ENST00000543140 ETFRF1Q6IPR1 90 aa13.02□□□□□ -0.33
COL4A1-204ENST00000543140 COL12A1Q99715 3063 aa13.02□□□□□ -0.33
COL4A1-204ENST00000543140 IFITM10A6NMD0 228 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 LCN2P80188 198 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 VMO1Q7Z5L0 202 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 OR1B1Q8NGR6 318 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 PFDN5Q99471 154 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 F11RQ9Y624 299 aaKnown RBP13.01□□□□□ -0.33
COL4A1-204ENST00000543140 TRAV20A0A0B4J274 112 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 HELTA6NFD8 242 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 S100A8P05109 93 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 CD99P14209 185 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 SRP14P37108 136 aaKnown RBP13.01□□□□□ -0.33
COL4A1-204ENST00000543140 CEACAM3P40198 252 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 SELENOTP62341 195 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 KCNIP4Q6PIL6 250 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 LINC00305Q7Z4B0 112 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 OR1L4Q8NGR5 311 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 SGMS2Q8NHU3 365 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 CFHR4Q92496 578 aa13.01□□□□□ -0.33
COL4A1-204ENST00000543140 FAM103A1Q9BTL3 118 aaKnown RBP13.01□□□□□ -0.33
COL4A1-204ENST00000543140 TGOLN2O43493 480 aa13□□□□□ -0.33
COL4A1-204ENST00000543140 GGCTO75223 188 aaKnown RBP13□□□□□ -0.33
COL4A1-204ENST00000543140 BPIFB3P59826 476 aa13□□□□□ -0.33
COL4A1-204ENST00000543140 OR5I1Q13606 314 aa13□□□□□ -0.33
COL4A1-204ENST00000543140 PVRIGQ6DKI7 326 aa13□□□□□ -0.33
COL4A1-204ENST00000543140 CDPF1Q6NVV7 123 aa13□□□□□ -0.33
COL4A1-204ENST00000543140 TEX38Q6PEX7 206 aa13□□□□□ -0.33
COL4A1-204ENST00000543140 C22orf15Q8WYQ4 148 aa13□□□□□ -0.33
COL4A1-204ENST00000543140 S100A9P06702 114 aaKnown RBP13□□□□□ -0.33
COL4A1-204ENST00000543140 CDX1P47902 265 aaPredicted RBP13□□□□□ -0.33
COL4A1-204ENST00000543140 CENPWQ5EE01 88 aa13□□□□□ -0.33
COL4A1-204ENST00000543140 EAF1Q96JC9 268 aaPredicted RBP13□□□□□ -0.33
COL4A1-204ENST00000543140 RNF2Q99496 336 aa13□□□□□ -0.33
COL4A1-204ENST00000543140 PAXXQ9BUH6 204 aa13□□□□□ -0.33
COL4A1-204ENST00000543140 ODF3BA8MYP8 253 aa12.99□□□□□ -0.33
COL4A1-204ENST00000543140 SLC17A3O00476 420 aa12.99□□□□□ -0.33
COL4A1-204ENST00000543140 NBR2O15453 112 aa12.99□□□□□ -0.33
COL4A1-204ENST00000543140 GNG4P50150 75 aa12.99□□□□□ -0.33
COL4A1-204ENST00000543140 DYNAPQ8N1N2 210 aa12.99□□□□□ -0.33
COL4A1-204ENST00000543140 TMEM116Q8NCL8 245 aa12.99□□□□□ -0.33
COL4A1-204ENST00000543140 OR10G8Q8NGN5 311 aa12.99□□□□□ -0.33
COL4A1-204ENST00000543140 RNF5Q99942 180 aa12.99□□□□□ -0.33
COL4A1-204ENST00000543140 ARL2-SNX15V9GYD0 113 aa12.99□□□□□ -0.33
COL4A1-204ENST00000543140 PPP1R2P9O14990 202 aa12.99□□□□□ -0.33
COL4A1-204ENST00000543140 WNT10AQ9GZT5 417 aa12.99□□□□□ -0.33
COL4A1-204ENST00000543140 IGSF10Q6WRI0 2623 aa12.98□□□□□ -0.33
COL4A1-204ENST00000543140 A0A1W2PRE2 83 aa12.98□□□□□ -0.33
COL4A1-204ENST00000543140 ZNF320A2RRD8 509 aa12.98□□□□□ -0.33
COL4A1-204ENST00000543140 A6NNC1 897 aa12.98□□□□□ -0.33
COL4A1-204ENST00000543140 GPR61Q9BZJ8 451 aa12.98□□□□□ -0.33
COL4A1-204ENST00000543140 OR51M1Q9H341 326 aa12.98□□□□□ -0.33
COL4A1-204ENST00000543140 ACACBO00763 2458 aa12.98□□□□□ -0.33
COL4A1-204ENST00000543140 C9JCJ5 164 aa12.98□□□□□ -0.33
COL4A1-204ENST00000543140 LINC00479Q96M42 142 aa12.98□□□□□ -0.33
COL4A1-204ENST00000543140 TRGV9Q99603 122 aa12.98□□□□□ -0.33
COL4A1-204ENST00000543140 CORTO00230 105 aa12.97□□□□□ -0.33
COL4A1-204ENST00000543140 SMIM6P0DI80 62 aa12.97□□□□□ -0.33
COL4A1-204ENST00000543140 EFNA4P52798 201 aa12.97□□□□□ -0.33
COL4A1-204ENST00000543140 FXYD3Q14802 87 aa12.97□□□□□ -0.33
COL4A1-204ENST00000543140 LEMD1Q68G75 181 aa12.97□□□□□ -0.33
COL4A1-204ENST00000543140 TCEAL7Q9BRU2 100 aa12.97□□□□□ -0.33
COL4A1-204ENST00000543140 ELOA3CA0A087WX78 387 aaPredicted RBP12.96□□□□□ -0.33
COL4A1-204ENST00000543140 ERVFC1-1P60608 527 aa12.96□□□□□ -0.33
COL4A1-204ENST00000543140 KLF17Q5JT82 389 aaPredicted RBP12.96□□□□□ -0.33
COL4A1-204ENST00000543140 FAM209BQ5JX69 171 aa12.96□□□□□ -0.33
COL4A1-204ENST00000543140 BLNKQ8WV28 456 aa12.96□□□□□ -0.33
COL4A1-204ENST00000543140 FXYD5Q96DB9 178 aa12.96□□□□□ -0.33
COL4A1-204ENST00000543140 FLNCQ14315 2725 aa12.96□□□□□ -0.33
COL4A1-204ENST00000543140 NCBP2LA6PVI3 153 aaKnown RBP12.96□□□□□ -0.34
COL4A1-204ENST00000543140 HOXB4P17483 251 aaPredicted RBP12.96□□□□□ -0.34
COL4A1-204ENST00000543140 FOXL1Q12952 345 aa12.96□□□□□ -0.34
COL4A1-204ENST00000543140 HIST3H2BBQ8N257 126 aa12.96□□□□□ -0.34
COL4A1-204ENST00000543140 BPESC1Q9GZL8 116 aa12.96□□□□□ -0.34
COL4A1-204ENST00000543140 GAR1Q9NY12 217 aaKnown RBP12.96□□□□□ -0.34
COL4A1-204ENST00000543140 I3L2K1 104 aa12.95□□□□□ -0.34
COL4A1-204ENST00000543140 HYPMO75409 117 aa12.95□□□□□ -0.34
COL4A1-204ENST00000543140 RANP62826 216 aaKnown RBP12.95□□□□□ -0.34
COL4A1-204ENST00000543140 NHLRC2Q8NBF2 726 aa12.95□□□□□ -0.34
COL4A1-204ENST00000543140 PERPQ96FX8 193 aa12.95□□□□□ -0.34
COL4A1-204ENST00000543140 S4R3C0 116 aa12.95□□□□□ -0.34
COL4A1-204ENST00000543140 CACNA1BQ00975 2339 aa12.95□□□□□ -0.34
COL4A1-204ENST00000543140 TYMSP04818 313 aa12.95□□□□□ -0.34
COL4A1-204ENST00000543140 S100A2P29034 98 aa12.95□□□□□ -0.34
COL4A1-204ENST00000543140 C1orf122Q6ZSJ8 110 aa12.95□□□□□ -0.34
COL4A1-204ENST00000543140 NPBQ8NG41 125 aa12.95□□□□□ -0.34
COL4A1-204ENST00000543140 RNASE7Q9H1E1 156 aaKnown RBP12.95□□□□□ -0.34
COL4A1-204ENST00000543140 H3BTX0 84 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 PSG1P11464 419 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 LYZP61626 148 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 S100A12P80511 92 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 C5orf64Q2M2E5 130 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 TIGITQ495A1 244 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 ACTL10Q5JWF8 245 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 ASPHD1Q5U4P2 390 aa12.94□□□□□ -0.34
COL4A1-204ENST00000543140 IMMP2LQ96T52 175 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms