RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FOXA2Q9Y261 457 aaPredicted RBP10.49□□□□□ -0.73
SFSWAP-209ENST00000540469 ARFGEF3Q5TH69 2177 aa10.48□□□□□ -0.73
SFSWAP-209ENST00000540469 C21orf140B9A014 251 aa10.48□□□□□ -0.73
SFSWAP-209ENST00000540469 OR2J3O76001 311 aa10.48□□□□□ -0.73
SFSWAP-209ENST00000540469 OR5AL1P0C617 328 aa10.48□□□□□ -0.73
SFSWAP-209ENST00000540469 TMEM177Q53S58 311 aa10.48□□□□□ -0.73
SFSWAP-209ENST00000540469 PDPNQ86YL7 162 aa10.48□□□□□ -0.73
SFSWAP-209ENST00000540469 CT55Q8WUE5 264 aa10.48□□□□□ -0.73
SFSWAP-209ENST00000540469 CADP27708 2225 aa10.48□□□□□ -0.73
SFSWAP-209ENST00000540469 SAA2P0DJI9 122 aaPredicted RBP10.48□□□□□ -0.73
SFSWAP-209ENST00000540469 MRPL32Q9BYC8 188 aaKnown RBP10.48□□□□□ -0.73
SFSWAP-209ENST00000540469 NCOR1P1Q9H4R4 102 aa10.48□□□□□ -0.73
SFSWAP-209ENST00000540469 TMEM14BQ9NUH8 114 aa10.48□□□□□ -0.73
SFSWAP-209ENST00000540469 FAM231BA6NCW3 169 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 H3BUT2 72 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 ATP5L2Q7Z4Y8 100 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 C11orf53Q8IXP5 236 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 PRR7Q8TB68 274 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 CHCHD1Q96BP2 118 aaKnown RBP10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 CALYQ9NYX4 217 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 HILPDAQ9Y5L2 63 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 TECTAO75443 2155 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 PGPA6NDG6 321 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 H3BTX0 84 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 ORM2P19652 201 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 FAM231DQ6ZW35 169 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 OR10W1Q8NGF6 305 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 TPPP3Q9BW30 176 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 MGST3O14880 152 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 FER1L6-AS1Q8NA97 138 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 OR1B1Q8NGR6 318 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 OR1N2Q8NGR9 330 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 RND1Q92730 232 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 RPP21Q9H633 154 aaKnown RBP10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 ZNF835Q9Y2P0 537 aa10.47□□□□□ -0.73
SFSWAP-209ENST00000540469 ZNF207O43670 478 aaKnown RBP10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 PET117Q6UWS5 81 aa10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 C6orf15Q6UXA7 325 aaPredicted RBP10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 SLC25A2Q9BXI2 301 aa10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 RP1L1Q8IWN7 2480 aaPredicted RBP10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 MEOX1P50221 254 aa10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 ERHP84090 104 aaKnown RBP10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 NHLH1Q02575 133 aa10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 TMEM97Q5BJF2 176 aa10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 ZNF329Q86UD4 541 aa10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 MBD6Q96DN6 1003 aa10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 URB1-AS1Q96HZ7 61 aa10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 SCRT2Q9NQ03 307 aa10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 SIT1Q9Y3P8 196 aa10.46□□□□□ -0.73
SFSWAP-209ENST00000540469 ASPMQ8IZT6 3477 aa10.46□□□□□ -0.74
SFSWAP-209ENST00000540469 A6NDN8 102 aa10.46□□□□□ -0.74
SFSWAP-209ENST00000540469 FA2HQ7L5A8 372 aa10.46□□□□□ -0.74
SFSWAP-209ENST00000540469 OR8A1Q8NGG7 326 aa10.46□□□□□ -0.74
SFSWAP-209ENST00000540469 OR1L4Q8NGR5 311 aa10.46□□□□□ -0.74
SFSWAP-209ENST00000540469 WFDC12Q8WWY7 111 aa10.46□□□□□ -0.74
SFSWAP-209ENST00000540469 KLF13Q9Y2Y9 288 aaPredicted RBP10.46□□□□□ -0.74
SFSWAP-209ENST00000540469 PCNX2A6NKB5 2137 aa10.46□□□□□ -0.74
SFSWAP-209ENST00000540469 FBLL1A6NHQ2 334 aaKnown RBP10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 RPL24P83731 157 aaKnown RBP10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 PRCDQ00LT1 54 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 TMEM116Q8NCL8 245 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 DEFB108BQ8NET1 73 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 PRSS3P2Q8NHM4 247 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 MS4A6AQ9H2W1 248 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 IGLC1P0CG04 106 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 COL8A1P27658 744 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 CD69Q07108 199 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 UTF1Q5T230 341 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 NPIPB3Q92617 1050 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 TMUB1Q9BVT8 246 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 CT45A1Q5HYN5 189 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 SVIPQ8NHG7 77 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 CT45A3Q8NHU0 189 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 DYSFO75923 2080 aa10.45□□□□□ -0.74
SFSWAP-209ENST00000540469 VWC2LB2RUY7 222 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 M0R296 226 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 GPR82Q96P67 336 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 FNDC10F2Z333 226 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 IGHV1-2P23083 117 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 SEC11AP67812 179 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 FAM120AOSQ5T036 256 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 C1orf229Q6ZS94 237 aaPredicted RBP10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 LINC00305Q7Z4B0 112 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 ADTRPQ96IZ2 230 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 FAM167A-AS1Q96KT0 104 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 AP5S1Q9NUS5 200 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 PAX2Q02962 417 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 SMAGPQ0VAQ4 97 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 H1FXQ92522 213 aaKnown RBP10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 GTSF1LQ9H1H1 148 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 EPDR1Q9UM22 224 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 SSUH2Q9Y2M2 353 aa10.44□□□□□ -0.74
SFSWAP-209ENST00000540469 IGKV1D-17A0A075B6S4 117 aa10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 TEX50A0A1B0GTY4 177 aa10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 UPK2O00526 184 aa10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 WISP2O76076 250 aa10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 APOHP02749 345 aaPredicted RBP10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 IGKV1-16P04430 117 aa10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 CSN1S1P47710 185 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms