RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 IGLC1P0CG04 106 aa22.67■■□□□ 1.22
LIMCH1-211ENST00000509638 OR10J1P30954 320 aa22.67■■□□□ 1.22
LIMCH1-211ENST00000509638 Q5BKY6 102 aa22.67■■□□□ 1.22
LIMCH1-211ENST00000509638 SMCO3A2RU48 225 aa22.66■■□□□ 1.22
LIMCH1-211ENST00000509638 LYL1P12980 280 aa22.66■■□□□ 1.22
LIMCH1-211ENST00000509638 DLK1P80370 383 aa22.66■■□□□ 1.22
LIMCH1-211ENST00000509638 EWSR1Q01844 656 aaKnown RBP eCLIP22.66■■□□□ 1.22
LIMCH1-211ENST00000509638 AKR1C1Q04828 323 aa22.66■■□□□ 1.22
LIMCH1-211ENST00000509638 SLC38A11Q08AI6 406 aa22.66■■□□□ 1.22
LIMCH1-211ENST00000509638 SLC25A31Q9H0C2 315 aa22.66■■□□□ 1.22
LIMCH1-211ENST00000509638 OVOL1O14753 267 aa22.65■■□□□ 1.22
LIMCH1-211ENST00000509638 IGKV1-17P01599 117 aa22.65■■□□□ 1.22
LIMCH1-211ENST00000509638 RELQ04864 619 aaPredicted RBP22.65■■□□□ 1.22
LIMCH1-211ENST00000509638 TIGITQ495A1 244 aa22.65■■□□□ 1.22
LIMCH1-211ENST00000509638 GPHB5Q86YW7 130 aa22.65■■□□□ 1.22
LIMCH1-211ENST00000509638 OR1S2Q8NGQ3 325 aa22.65■■□□□ 1.22
LIMCH1-211ENST00000509638 TRAV30A0A087WSZ9 112 aa22.64■■□□□ 1.22
LIMCH1-211ENST00000509638 A0A1B0GVG6 124 aa22.64■■□□□ 1.22
LIMCH1-211ENST00000509638 ZNF414Q96IQ9 312 aa22.64■■□□□ 1.22
LIMCH1-211ENST00000509638 HBG1P69891 147 aa22.63■■□□□ 1.21
LIMCH1-211ENST00000509638 HBG2P69892 147 aa22.63■■□□□ 1.21
LIMCH1-211ENST00000509638 UNQ9165/PRO28630Q6UXU0 137 aa22.63■■□□□ 1.21
LIMCH1-211ENST00000509638 LILRB2Q8N423 598 aa22.63■■□□□ 1.21
LIMCH1-211ENST00000509638 WFDC9Q8NEX5 89 aa22.63■■□□□ 1.21
LIMCH1-211ENST00000509638 ZFP92A6NM28 416 aa22.63■■□□□ 1.21
LIMCH1-211ENST00000509638 G3V3Q6 166 aa22.63■■□□□ 1.21
LIMCH1-211ENST00000509638 FAM106AQ4KMX7 169 aa22.63■■□□□ 1.21
LIMCH1-211ENST00000509638 IGKV1OR2-108A0A075B7D4 117 aa22.62■■□□□ 1.21
LIMCH1-211ENST00000509638 ZNF320A2RRD8 509 aa22.62■■□□□ 1.21
LIMCH1-211ENST00000509638 NDUFA4O00483 81 aa22.62■■□□□ 1.21
LIMCH1-211ENST00000509638 NHLH2Q02577 135 aa22.62■■□□□ 1.21
LIMCH1-211ENST00000509638 BAXQ07812 192 aa22.62■■□□□ 1.21
LIMCH1-211ENST00000509638 REC114Q7Z4M0 266 aa22.62■■□□□ 1.21
LIMCH1-211ENST00000509638 OR9G4Q8NGQ1 327 aa22.62■■□□□ 1.21
LIMCH1-211ENST00000509638 TMEM190Q8WZ59 177 aa22.62■■□□□ 1.21
LIMCH1-211ENST00000509638 GGACTQ9BVM4 153 aa22.62■■□□□ 1.21
LIMCH1-211ENST00000509638 IGKV1D-37A0A075B6S9 117 aa22.61■■□□□ 1.21
LIMCH1-211ENST00000509638 FNDC10F2Z333 226 aa22.61■■□□□ 1.21
LIMCH1-211ENST00000509638 RPL12P30050 165 aaKnown RBP22.61■■□□□ 1.21
LIMCH1-211ENST00000509638 ZNF600Q6ZNG1 722 aa22.61■■□□□ 1.21
LIMCH1-211ENST00000509638 THAP8Q8NA92 274 aa22.61■■□□□ 1.21
LIMCH1-211ENST00000509638 RCC1LQ96I51 464 aaKnown RBP22.61■■□□□ 1.21
LIMCH1-211ENST00000509638 IGHV3OR16-8A0A075B7F1 116 aa22.6■■□□□ 1.21
LIMCH1-211ENST00000509638 SMLR1H3BR10 107 aa22.6■■□□□ 1.21
LIMCH1-211ENST00000509638 LGALS9O00182 355 aa22.6■■□□□ 1.21
LIMCH1-211ENST00000509638 S100A11P31949 105 aa22.6■■□□□ 1.21
LIMCH1-211ENST00000509638 FXYD6-FXYD2A0A087WZ82 144 aa22.59■■□□□ 1.21
LIMCH1-211ENST00000509638 YIF1AO95070 293 aa22.59■■□□□ 1.21
LIMCH1-211ENST00000509638 TMEM144Q7Z5S9 345 aa22.59■■□□□ 1.21
LIMCH1-211ENST00000509638 OR5C1Q8NGR4 320 aa22.59■■□□□ 1.21
LIMCH1-211ENST00000509638 PUS1Q9Y606 427 aaKnown RBP eCLIP22.59■■□□□ 1.21
LIMCH1-211ENST00000509638 A8MWP6 167 aa22.59■■□□□ 1.21
LIMCH1-211ENST00000509638 C20orf24Q9BUV8 137 aa22.59■■□□□ 1.21
LIMCH1-211ENST00000509638 NBEAL1Q6ZS30 2694 aa22.58■■□□□ 1.21
LIMCH1-211ENST00000509638 SEC14L6B5MCN3 397 aa22.58■■□□□ 1.2
LIMCH1-211ENST00000509638 YPEL3P61236 119 aaPredicted RBP22.58■■□□□ 1.2
LIMCH1-211ENST00000509638 ZNF90Q03938 601 aa22.58■■□□□ 1.2
LIMCH1-211ENST00000509638 TRGV9Q99603 122 aa22.58■■□□□ 1.2
LIMCH1-211ENST00000509638 TMEM147Q9BVK8 224 aa22.58■■□□□ 1.2
LIMCH1-211ENST00000509638 NPVFQ9HCQ7 196 aa22.58■■□□□ 1.2
LIMCH1-211ENST00000509638 UQCC1Q9NVA1 299 aa22.58■■□□□ 1.2
LIMCH1-211ENST00000509638 PEMTQ9UBM1 199 aa22.58■■□□□ 1.2
LIMCH1-211ENST00000509638 HSPB11Q9Y547 144 aa22.58■■□□□ 1.2
LIMCH1-211ENST00000509638 IGLL1P15814 213 aa22.57■■□□□ 1.2
LIMCH1-211ENST00000509638 TOMM20LQ6UXN7 152 aa22.57■■□□□ 1.2
LIMCH1-211ENST00000509638 ZFAND3Q9H8U3 227 aa22.57■■□□□ 1.2
LIMCH1-211ENST00000509638 UBE2L5PA0A1B0GUS4 154 aa22.56■■□□□ 1.2
LIMCH1-211ENST00000509638 CLINT1Q14677 625 aa22.56■■□□□ 1.2
LIMCH1-211ENST00000509638 VWC2Q2TAL6 325 aa22.56■■□□□ 1.2
LIMCH1-211ENST00000509638 ST6GAL2Q96JF0 529 aa22.56■■□□□ 1.2
LIMCH1-211ENST00000509638 MCRIP2Q9BUT9 160 aaKnown RBP22.56■■□□□ 1.2
LIMCH1-211ENST00000509638 UFC1Q9Y3C8 167 aa22.56■■□□□ 1.2
LIMCH1-211ENST00000509638 TMEM213A2RRL7 107 aa22.55■■□□□ 1.2
LIMCH1-211ENST00000509638 TOMM40O96008 361 aa22.55■■□□□ 1.2
LIMCH1-211ENST00000509638 ELOVL1Q9BW60 279 aa22.55■■□□□ 1.2
LIMCH1-211ENST00000509638 NOTCH1P46531 2555 aa22.55■■□□□ 1.2
LIMCH1-211ENST00000509638 SAP30O75446 220 aa22.55■■□□□ 1.2
LIMCH1-211ENST00000509638 RD3LP0DJH9 198 aa22.55■■□□□ 1.2
LIMCH1-211ENST00000509638 EDN2P20800 178 aa22.55■■□□□ 1.2
LIMCH1-211ENST00000509638 TM4SF20Q53R12 229 aa22.55■■□□□ 1.2
LIMCH1-211ENST00000509638 TEPPQ6URK8 271 aa22.55■■□□□ 1.2
LIMCH1-211ENST00000509638 ZNF546Q86UE3 836 aa22.55■■□□□ 1.2
LIMCH1-211ENST00000509638 AQP10Q96PS8 301 aa22.55■■□□□ 1.2
LIMCH1-211ENST00000509638 DAZ1Q9NQZ3 744 aaKnown RBP22.55■■□□□ 1.2
LIMCH1-211ENST00000509638 C2orf70A6NJV1 201 aa22.54■■□□□ 1.2
LIMCH1-211ENST00000509638 ZNF207O43670 478 aaKnown RBP22.54■■□□□ 1.2
LIMCH1-211ENST00000509638 FABP1P07148 127 aa22.54■■□□□ 1.2
LIMCH1-211ENST00000509638 PSG1P11464 419 aa22.54■■□□□ 1.2
LIMCH1-211ENST00000509638 ATP6V1FQ16864 119 aa22.54■■□□□ 1.2
LIMCH1-211ENST00000509638 IL34Q6ZMJ4 242 aa22.54■■□□□ 1.2
LIMCH1-211ENST00000509638 Q8WTZ3 238 aa22.54■■□□□ 1.2
LIMCH1-211ENST00000509638 LSM4Q9Y4Z0 139 aaKnown RBP22.54■■□□□ 1.2
LIMCH1-211ENST00000509638 NUP62P37198 522 aaPredicted RBP22.53■■□□□ 1.2
LIMCH1-211ENST00000509638 AKAP14Q86UN6 197 aa22.53■■□□□ 1.2
LIMCH1-211ENST00000509638 TNFSF18Q9UNG2 199 aa22.53■■□□□ 1.2
LIMCH1-211ENST00000509638 IL4P05112 153 aa22.52■■□□□ 1.2
LIMCH1-211ENST00000509638 CSN3P07498 182 aa22.52■■□□□ 1.2
LIMCH1-211ENST00000509638 OR2F1Q13607 317 aa22.52■■□□□ 1.2
LIMCH1-211ENST00000509638 INO80EQ8NBZ0 244 aaPredicted RBP22.52■■□□□ 1.2
LIMCH1-211ENST00000509638 GINS3Q9BRX5 216 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms