RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TMEM238C9JI98 176 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 FCN1O00602 326 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 CD33P20138 364 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 SUMO1P63165 101 aaKnown RBP13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 SSBP2P81877 361 aaPredicted RBP13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TMEM200BQ69YZ2 307 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 OR2D3Q8NGH3 330 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 IGF2BP2-AS1Q96M15 143 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 SLC25A2Q9BXI2 301 aa13.01□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TRAV5A0A0B4J249 113 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 SNURFLB1AK76 121 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 INS-IGF2F8WCM5 200 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 CCL25O15444 150 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TAS2R45P59539 299 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 RPL8P62917 257 aaKnown RBP13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 PAFAH1B2P68402 229 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ADIPOQQ15848 244 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 CACNG8Q8WXS5 425 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 GNB1LQ9BYB4 327 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TMEM106BQ9NUM4 274 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 DPRXA6NFQ7 191 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 C17orf100A8MU93 164 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 APOA2P02652 100 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 REG1BP48304 166 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 CX3CL1P78423 397 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 Q0VG73 95 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 DIAPH2-AS1Q14236 149 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ZNF714Q96N38 554 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ALKBH7Q9BT30 221 aaPredicted RBP13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 COMMD5Q9GZQ3 224 aa13□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ROS1P08922 2347 aa12.99□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TRBV9A0A0B4J1U6 114 aa12.99□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TNFRSF1AP19438 455 aa12.99□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 BMI1P35226 326 aa12.99□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 PPOXP50336 477 aa12.99□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TPPP2P59282 170 aa12.99□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 FXYD3Q14802 87 aa12.99□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TIGITQ495A1 244 aa12.99□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TMEM108Q6UXF1 575 aa12.99□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TBX15Q96SF7 602 aa12.99□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 MRPL32Q9BYC8 188 aaKnown RBP12.99□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 CSMD2Q7Z408 3487 aa12.99□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ISLRO14498 428 aa12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ERHP84090 104 aaKnown RBP12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 WT1-ASQ06250 92 aa12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 UBE2V1Q13404 147 aa12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TMEM167AQ8TBQ9 72 aa12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 FLYWCH2Q96CP2 140 aaKnown RBP12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 CSTL1Q9H114 145 aa12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 FNDC4Q9H6D8 234 aaPredicted RBP12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 RPH3ALQ9UNE2 315 aa12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 HELZ2Q9BYK8 2649 aaKnown RBP12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TACC2O95359 2948 aa12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 A0A0G2JNJ9 132 aa12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TNFRSF13BO14836 293 aaPredicted RBP12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 C10orf55Q5SWW7 151 aa12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TMEM136Q6ZRR5 245 aa12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 Q9UFV3 132 aa12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 NBPF19A0A087WUL8 3843 aa12.98□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 SPINK4O60575 86 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 IGLV2-23P01705 113 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 THBDP07204 575 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 USF1P22415 310 aaPredicted RBP12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TPTE2P1Q5T6R2 138 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 LYPD2Q6UXB3 125 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 WFDC8Q8IUA0 241 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 IGKV1D-37A0A075B6S9 117 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ZNF705FA8MVS1 300 aaPredicted RBP12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TMEM178BH3BS89 294 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TOMM40O96008 361 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ZNF705DP0CH99 300 aaPredicted RBP12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ZNF705BP0CI00 300 aaPredicted RBP12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 PATE2Q6UY27 113 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ZNF596Q8TC21 504 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 ST6GALNAC6Q969X2 333 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 HSPB9Q9BQS6 159 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 GNB4Q9HAV0 340 aa12.97□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 PPIAL4EA0A075B759 164 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 SMIM27A0A1W2PRY6 76 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 PPIAL4DF5H284 164 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 C16orf97H3BN30 126 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 PPIAL4FP0DN26 164 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 GNLYP22749 145 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TCL1AP56279 114 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 RNF151Q2KHN1 245 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 TDRG1Q3Y452 100 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 BAGE3Q86Y29 109 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 BAGE2Q86Y30 109 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 OR5AU1Q8NGC0 362 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 OR4C13Q8NGP0 309 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 OR4A5Q8NH83 315 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 LINC00479Q96M42 142 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 RNF2Q99496 336 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 MRPL36Q9P0J6 103 aaKnown RBP12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 PPIAL4AQ9Y536 164 aa12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 GCN1Q92616 2671 aaKnown RBP12.96□□□□□ -0.33
MSH5-SAPCD1-208ENST00000498473 NAV3Q8IVL0 2385 aa12.96□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 CBY3A6NI87 242 aa12.96□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 FSTL3O95633 263 aa12.96□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 CDKN1AP38936 164 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms