RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ADMP35318 185 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 LEAP2Q969E1 77 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 SRXN1Q9BYN0 137 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 IFI27L2Q9H2X8 130 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 JPT1Q9UK76 154 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 YTHDF2Q9Y5A9 579 aaKnown RBP4.36□□□□□ -1.71
SYNE1-220ENST00000471834 BRWD1Q9NSI6 2320 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 HELTA6NFD8 242 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 IGLV1-44P01699 117 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 IGLL1P15814 213 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 C2orf91Q6ZV80 131 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 TMEM116Q8NCL8 245 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 SRRM5B3KS81 715 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 GGTLC3B5MD39 225 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 CXorf1O96002 111 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 LHFPL4Q7Z7J7 247 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 PAM16Q9Y3D7 125 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 ZNF503-AS2A6NEH8 195 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 FOXH1O75593 365 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 IGHG3P01860 377 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 MMDQ15546 238 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 C3orf36Q3SXR2 165 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 GTSCR1Q86UQ5 136 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 SDK1Q7Z5N4 2213 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 P01737 135 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 GCSHP23434 173 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 TFPI2P48307 235 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 UBE2L3P68036 154 aaKnown RBP4.36□□□□□ -1.71
SYNE1-220ENST00000471834 MRGPRG-AS1Q2M3A8 158 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 LINC01559Q495D7 138 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 DOLPP1Q86YN1 238 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 ZNF738Q8NE65 137 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 PGLYRP4Q96LB8 373 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 MRPL32Q9BYC8 188 aaKnown RBP4.36□□□□□ -1.71
SYNE1-220ENST00000471834 SIGLEC8Q9NYZ4 499 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 U3KQK5 164 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 IGHV3OR16-10A0A075B7F0 116 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 CDKN1AP38936 164 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 ZNF575Q86XF7 245 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 VKORC1L1Q8N0U8 176 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 THAP8Q8NA92 274 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 IL17DQ8TAD2 202 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 DERL1Q9BUN8 251 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 TTTY12Q9BZ98 90 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 IGHV3OR16-12A0A075B7B8 117 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 FRMD6-AS1P0C7T7 363 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 IGLC1P0CG04 106 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 SEC11AP67812 179 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 EFNB3Q15768 340 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 SPATA45Q537H7 98 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 GDF5OSQ5U4N7 250 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 ADAMTSL5Q6ZMM2 481 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 TSKUQ8WUA8 353 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 CHCHD1Q96BP2 118 aaKnown RBP4.35□□□□□ -1.71
SYNE1-220ENST00000471834 OR2V2Q96R30 315 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 SSBP4Q9BWG4 385 aaPredicted RBP4.35□□□□□ -1.71
SYNE1-220ENST00000471834 HSPB8Q9UJY1 196 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 IGHV3-72A0A0B4J1Y9 119 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 C7orf71A4D174 169 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 PSPNO60542 156 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 NMUP48645 174 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 ASCL5Q7RTU5 278 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 PPP1R32Q7Z5V6 425 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 MYOZ3Q8TDC0 251 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 RNF24Q9Y225 148 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 IGHV3-66A0A0C4DH42 116 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 IZUMO1RA6ND01 250 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 LINC00473A8K010 186 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 NKX2-8O15522 239 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 HSBP1O75506 76 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 ATP5G3P48201 142 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 MTURNQ8N3F0 131 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 LINC00311Q8N616 119 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 TPRX1Q8N7U7 411 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 A0A1B0GW15 77 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 TCF21O43680 179 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 CD40P25942 277 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 ABHD12Q8N2K0 398 aa4.35□□□□□ -1.71
SYNE1-220ENST00000471834 TRAV38-1A0A0B4J264 116 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 PRSS1P07477 247 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 OR4S2Q8NH73 311 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 TMEM167BQ9NRX6 74 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 THADAQ6YHU6 1953 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 IGLV3-9A0A075B6K5 115 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 CIDEAO60543 219 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 Q5PR19 223 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 ST6GALNAC6Q969X2 333 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 HTN3P15516 51 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 PRCDQ00LT1 54 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 OCIAD2Q56VL3 154 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 TMEM105Q8N8V8 129 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 ABHD17AQ96GS6 310 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 MGST2Q99735 147 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 BET1LQ9NYM9 111 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 FOXJ2Q9P0K8 574 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 RCHY1Q96PM5 261 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 TMEM133Q9H2Q1 129 aa4.34□□□□□ -1.71
SYNE1-220ENST00000471834 A0A1W2PRS3 328 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 A0A1W2PRX2 142 aa4.34□□□□□ -1.72
SYNE1-220ENST00000471834 DPRXA6NFQ7 191 aa4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms