RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 ZNF121P58317 390 aaPredicted RBP2.09□□□□□ -2.07
VPS13A-210ENST00000471439 TAS2R31P59538 309 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 TAS2R46P59540 309 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 HIST1H3AP68431 136 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 HPCAP84074 193 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 COX19Q49B96 90 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 RNASE13Q5GAN3 156 aaKnown RBP2.09□□□□□ -2.07
VPS13A-210ENST00000471439 SPANXN3Q5MJ09 141 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 HIST2H3PS2Q5TEC6 136 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 HAGHLQ6PII5 290 aaPredicted RBP2.09□□□□□ -2.07
VPS13A-210ENST00000471439 HIST2H3AQ71DI3 136 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 GPHB5Q86YW7 130 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 OR6V1Q8N148 313 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 C8orf31Q8N9H6 132 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 LRRC75AQ8NAA5 344 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 OR10W1Q8NGF6 305 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 OR4B1Q8NGF8 309 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 OR4D6Q8NGJ1 314 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 OR10X1Q8NGY0 326 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 C1orf54Q8WWF1 131 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 RTN4IP1Q8WWV3 396 aaPredicted RBP2.09□□□□□ -2.07
VPS13A-210ENST00000471439 OR5P3Q8WZ94 311 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 USMG5Q96IX5 58 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 RNF170Q96K19 258 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 ZNF2Q9BSG1 426 aaPredicted RBP2.09□□□□□ -2.07
VPS13A-210ENST00000471439 CHST6Q9GZX3 395 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 HDHD2Q9H0R4 259 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 TMEM27Q9HBJ8 222 aa2.09□□□□□ -2.07
VPS13A-210ENST00000471439 RABL2AQ9UBK7 228 aaPredicted RBP2.09□□□□□ -2.07
VPS13A-210ENST00000471439 AHNAKQ09666 5890 aaKnown RBP2.08□□□□□ -2.08
VPS13A-210ENST00000471439 IGKV1-27A0A075B6S5 117 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 TRGV10A0A0A0MS01 117 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.08□□□□□ -2.08
VPS13A-210ENST00000471439 A6NDN8 102 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 C9JCJ5 164 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 CXCR6O00574 342 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 LECT2O14960 151 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 GGCTO75223 188 aaKnown RBP2.08□□□□□ -2.08
VPS13A-210ENST00000471439 SLC22A5O76082 557 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 HPRT1P00492 218 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 CTSDP07339 412 aaPredicted RBP2.08□□□□□ -2.08
VPS13A-210ENST00000471439 CGB7P0DN87 165 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 TCP1P17987 556 aaKnown RBP2.08□□□□□ -2.08
VPS13A-210ENST00000471439 POLR2IP36954 125 aaKnown RBP2.08□□□□□ -2.08
VPS13A-210ENST00000471439 MAGEA6P43360 314 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 CMC4P56277 68 aaPredicted RBP2.08□□□□□ -2.08
VPS13A-210ENST00000471439 GRB2P62993 217 aaKnown RBP2.08□□□□□ -2.08
VPS13A-210ENST00000471439 FAM3AP98173 230 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 RPL18Q07020 188 aaKnown RBP2.08□□□□□ -2.08
VPS13A-210ENST00000471439 IL18Q14116 193 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 GRK1Q15835 563 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 ASB16-AS1Q495Z4 193 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 LAMTOR1Q6IAA8 161 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 SPINK6Q6UWN8 80 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 RNF182Q8N6D2 247 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 AQP3Q92482 292 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 TMEM243Q9BU79 118 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 OR51I2Q9H344 312 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 MED4Q9NPJ6 270 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 TVP23BQ9NYZ1 205 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 MRPL27Q9P0M9 148 aaKnown RBP2.08□□□□□ -2.08
VPS13A-210ENST00000471439 STX18Q9P2W9 335 aaKnown RBP2.08□□□□□ -2.08
VPS13A-210ENST00000471439 ZNF230Q9UIE0 474 aaPredicted RBP2.08□□□□□ -2.08
VPS13A-210ENST00000471439 PSORS1C2Q9UIG4 136 aa2.08□□□□□ -2.08
VPS13A-210ENST00000471439 RBFOX3A6NFN3 312 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 H7C1C5 153 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 M0R135 149 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 HMGN4O00479 90 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 CASQ2O14958 399 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-210ENST00000471439 SERPINB7O75635 380 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 HLA-DQB1P01920 261 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 ASAH2BP0C7U1 165 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 PYCR1P32322 319 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 LSM6P62312 80 aaKnown RBP2.07□□□□□ -2.08
VPS13A-210ENST00000471439 LCN6P62502 163 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 PRDX4Q13162 271 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 LIN52Q52LA3 116 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 KRTAP13-2Q52LG2 175 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 ULK3Q6PHR2 472 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 UNQ9165/PRO28630Q6UXU0 137 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 C4orf22Q6V702 233 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 VKORC1L1Q8N0U8 176 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 TMEM256Q8N2U0 113 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 RASSF5Q8WWW0 418 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 DEDD2Q8WXF8 326 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 GNPNAT1Q96EK6 184 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-210ENST00000471439 TRNT1Q96Q11 434 aaKnown RBP2.07□□□□□ -2.08
VPS13A-210ENST00000471439 AMELYQ99218 206 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 FBXL15Q9H469 300 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 INIPQ9NRY2 104 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 LHFPL6Q9Y693 200 aa2.07□□□□□ -2.08
VPS13A-210ENST00000471439 IGHV3OR16-9A0A0B4J2B5 98 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 A8MUU9 505 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 ZNF705FA8MVS1 300 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-210ENST00000471439 ANKRD65E5RJM6 399 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 PIAS1O75925 651 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 NDUFA3O95167 84 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 IGKV1D-12P01611 117 aa2.06□□□□□ -2.08
VPS13A-210ENST00000471439 ZNF705DP0CH99 300 aaPredicted RBP2.06□□□□□ -2.08
VPS13A-210ENST00000471439 ZNF705BP0CI00 300 aaPredicted RBP2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms