RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 RBMXL3Q8N7X1 1067 aaKnown RBP7.06□□□□□ -1.28
USP40-203ENST00000427112 OR5B3Q8NH48 314 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 TRGV10A0A0A0MS01 117 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 FAM90A26D6RGX4 464 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 ISLRO14498 428 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 NUDT3O95989 172 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 CD99P14209 185 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 OR10X1Q8NGY0 326 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 OR4S2Q8NH73 311 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 PYGO2Q9BRQ0 406 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 COL25A1Q9BXS0 654 aaPredicted RBP7.06□□□□□ -1.28
USP40-203ENST00000427112 COX7A2P2O60397 106 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 SP9P0CG40 484 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 PSG1P11464 419 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 LOXL3P58215 753 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 HSPE1P61604 102 aaKnown RBP7.05□□□□□ -1.28
USP40-203ENST00000427112 INO80CQ6PI98 192 aaPredicted RBP7.05□□□□□ -1.28
USP40-203ENST00000427112 LYPD2Q6UXB3 125 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 ZNF841Q6ZN19 808 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 MUC15Q8N387 334 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 PGLYRP4Q96LB8 373 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 IL36BQ9NZH7 164 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 LAMTOR2Q9Y2Q5 125 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 A0A1B0GV72 72 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 SLC25A5P05141 298 aaKnown RBP7.05□□□□□ -1.28
USP40-203ENST00000427112 P0C879 139 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 TM4SF20Q53R12 229 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 ZNF474Q6S9Z5 364 aaPredicted RBP7.05□□□□□ -1.28
USP40-203ENST00000427112 STPG4Q8N801 248 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 ZNF331Q9NQX6 463 aaPredicted RBP7.05□□□□□ -1.28
USP40-203ENST00000427112 TIMM9Q9Y5J7 89 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 C2CD3Q4AC94 2353 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 MGST3O14880 152 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 IGHV3-23P01764 117 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 AMMECR1LQ6DCA0 310 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 LOXL4Q96JB6 756 aa7.05□□□□□ -1.28
USP40-203ENST00000427112 USP9YO00507 2555 aaPredicted RBP7.05□□□□□ -1.28
USP40-203ENST00000427112 PTPRBP23467 1997 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 LINC00614P0C842 121 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 TNXAQ16473 311 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 C17orf58Q2M2W7 97 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 AARDQ4LEZ3 155 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 KLF17Q5JT82 389 aaPredicted RBP7.04□□□□□ -1.28
USP40-203ENST00000427112 C1orf194Q5T5A4 169 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 DEFB104AQ8WTQ1 72 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 ZNF503Q96F45 646 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 TEX50A0A1B0GTY4 177 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 M0R2Z0 102 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 C3orf79P0CE67 100 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 TDGF1P13385 188 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 NRN1LQ496H8 165 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 IGFL4Q6B9Z1 124 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 TMEM116Q8NCL8 245 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 SMIM12Q96EX1 92 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 FNDC4Q9H6D8 234 aaPredicted RBP7.04□□□□□ -1.28
USP40-203ENST00000427112 V9GYV3 84 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 ZFHX3Q15911 3703 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 hDV102S1A0JD36 115 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 C15orf61A6NNL5 157 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 TMEM238C9JI98 176 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 FAM87AP0C7U9 286 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 CT45A6P0DMU7 189 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 CT45A5P0DMU8 189 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 CT45A7P0DMV0 189 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 SRSF7Q16629 238 aaKnown RBP eCLIP7.04□□□□□ -1.28
USP40-203ENST00000427112 SSX8Q7RTT4 187 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 OR8B2Q96RD0 313 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 UQCR10Q9UDW1 63 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 CDC42EP3Q9UKI2 254 aa7.04□□□□□ -1.28
USP40-203ENST00000427112 IGHV3OR16-13A0A075B7E8 117 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 IGHV3-74A0A0B4J1X5 117 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 LOC389332A0A1B0GUA5 103 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 A0A1W2PS18 150 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 PGPA6NDG6 321 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 C21orf140B9A014 251 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 NPIPB11E5RHQ5 1161 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 MKRN2OSH3BPM6 223 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 APCSP02743 223 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 ADH4P08319 380 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 TMEM144Q7Z5S9 345 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 PPP1R35Q8TAP8 253 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 SPRY4Q9C004 299 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 CHODLQ9H9P2 273 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 FAM208BQ5VWN6 2430 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 VENTXO95231 258 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 NHLH1Q02575 133 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 EIF4EBP1Q13541 118 aaPredicted RBP7.03□□□□□ -1.28
USP40-203ENST00000427112 PLGLAQ15195 96 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 SEM1Q6ZVN7 128 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 AMMECR1Q9Y4X0 333 aaPredicted RBP7.03□□□□□ -1.28
USP40-203ENST00000427112 ZFYVE26Q68DK2 2539 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 hADV38S2A0JD32 116 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 SRRM5B3KS81 715 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 TNFSF13O75888 250 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 IGKV3-15P01624 115 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 BMI1P35226 326 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 LYZP61626 148 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 MIEN1Q9BRT3 115 aa7.03□□□□□ -1.28
USP40-203ENST00000427112 MRPS18CQ9Y3D5 142 aaKnown RBP7.03□□□□□ -1.28
USP40-203ENST00000427112 HIGD1CA8MV81 97 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 916.2 ms