RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PRR20AP86496 221 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 ATG101Q9BSB4 218 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 CBLN4Q9NTU7 201 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 PAM16Q9Y3D7 125 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 PGPA6NDG6 321 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 H0Y8G0 127 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 CORTO00230 105 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 DLL1O00548 723 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 SERF1AO75920 110 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 RNF224P0DH78 156 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 TAS2R45P59539 299 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 RPEL1Q2QD12 228 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 IBA57Q5T440 356 aaKnown RBP10.79□□□□□ -0.68
VPS54-203ENST00000409558 VN1R17PQ8TDU5 208 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 HSPB9Q9BQS6 159 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 DMRT1Q9Y5R6 373 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 MUC21A0A0G2JKD1 596 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 MUC21A0A140T8X8 626 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 VENTXO95231 258 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 IQCJQ1A5X6 159 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 MUC21Q5SSG8 566 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 ZNF664Q8N3J9 261 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 OR5B3Q8NH48 314 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 CMTM2Q8TAZ6 248 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 CORO2AQ92828 525 aa10.79□□□□□ -0.68
VPS54-203ENST00000409558 AMMECR1Q9Y4X0 333 aaPredicted RBP10.79□□□□□ -0.68
VPS54-203ENST00000409558 HRNRQ86YZ3 2850 aaPredicted RBP10.78□□□□□ -0.68
VPS54-203ENST00000409558 ISLRO14498 428 aa10.78□□□□□ -0.68
VPS54-203ENST00000409558 RPL27AP46776 148 aaKnown RBP10.78□□□□□ -0.68
VPS54-203ENST00000409558 TDRG1Q3Y452 100 aa10.78□□□□□ -0.68
VPS54-203ENST00000409558 ACTL10Q5JWF8 245 aa10.78□□□□□ -0.68
VPS54-203ENST00000409558 Q71RC1 249 aaPredicted RBP10.78□□□□□ -0.68
VPS54-203ENST00000409558 OSR1Q8TAX0 266 aaPredicted RBP10.78□□□□□ -0.68
VPS54-203ENST00000409558 SELENOKQ9Y6D0 94 aa10.78□□□□□ -0.68
VPS54-203ENST00000409558 SETD2Q9BYW2 2564 aaPredicted RBP10.78□□□□□ -0.68
VPS54-203ENST00000409558 GGCTO75223 188 aaKnown RBP10.78□□□□□ -0.68
VPS54-203ENST00000409558 DDTP30046 118 aa10.78□□□□□ -0.68
VPS54-203ENST00000409558 SRP14P37108 136 aaKnown RBP10.78□□□□□ -0.68
VPS54-203ENST00000409558 CR1LQ2VPA4 569 aa10.78□□□□□ -0.68
VPS54-203ENST00000409558 TEX36Q5VZQ5 186 aa10.78□□□□□ -0.68
VPS54-203ENST00000409558 ZNF705AQ6ZN79 300 aaPredicted RBP10.78□□□□□ -0.68
VPS54-203ENST00000409558 NDUFA4L2Q9NRX3 87 aa10.78□□□□□ -0.68
VPS54-203ENST00000409558 FKBP11Q9NYL4 201 aa10.78□□□□□ -0.68
VPS54-203ENST00000409558 SH2D7A6NKC9 451 aaPredicted RBP10.78□□□□□ -0.68
VPS54-203ENST00000409558 USF1P22415 310 aaPredicted RBP10.78□□□□□ -0.68
VPS54-203ENST00000409558 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.78□□□□□ -0.68
VPS54-203ENST00000409558 NUP37Q8NFH4 326 aa10.78□□□□□ -0.68
VPS54-203ENST00000409558 IGHV3OR16-10A0A075B7F0 116 aa10.77□□□□□ -0.68
VPS54-203ENST00000409558 IGHV2-26A0A0B4J1V2 119 aa10.77□□□□□ -0.68
VPS54-203ENST00000409558 GPX4P36969 197 aaPredicted RBP10.77□□□□□ -0.68
VPS54-203ENST00000409558 UBE2G1P62253 170 aa10.77□□□□□ -0.68
VPS54-203ENST00000409558 CGB1A6NKQ9 187 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 APOBEC3AP31941 199 aaPredicted RBP10.77□□□□□ -0.69
VPS54-203ENST00000409558 MFAP2P55001 183 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 ZNF833PQ6ZTB9 187 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 TMEM133Q9H2Q1 129 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 IGHV3OR16-13A0A075B7E8 117 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 IGHV3-74A0A0B4J1X5 117 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 PAX5Q02548 391 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 DMRTC2Q8IXT2 367 aaPredicted RBP10.77□□□□□ -0.69
VPS54-203ENST00000409558 RAB1CQ92928 201 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 TBX15Q96SF7 602 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 TMEM167BQ9NRX6 74 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 BET1LQ9NYM9 111 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 PKD1L2Q7Z442 2459 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 A0A1W2PN81 502 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 SUB1P53999 127 aaKnown RBP eCLIP10.77□□□□□ -0.69
VPS54-203ENST00000409558 PATE2Q6UY27 113 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 OR2D3Q8NGH3 330 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 OR5AN1Q8NGI8 311 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 DIRC2Q96SL1 478 aa10.77□□□□□ -0.69
VPS54-203ENST00000409558 M0QZ24 198 aa10.76□□□□□ -0.69
VPS54-203ENST00000409558 ZNF253O75346 499 aa10.76□□□□□ -0.69
VPS54-203ENST00000409558 FOXA3P55318 350 aaPredicted RBP10.76□□□□□ -0.69
VPS54-203ENST00000409558 SRIP30626 198 aa10.76□□□□□ -0.69
VPS54-203ENST00000409558 ZNF672Q499Z4 452 aaPredicted RBP10.76□□□□□ -0.69
VPS54-203ENST00000409558 TCF24Q7RTU0 167 aa10.76□□□□□ -0.69
VPS54-203ENST00000409558 EXOC3-AS1Q8N2X6 119 aa10.76□□□□□ -0.69
VPS54-203ENST00000409558 C14orf144Q96I85 54 aa10.76□□□□□ -0.69
VPS54-203ENST00000409558 SLC25A2Q9BXI2 301 aa10.76□□□□□ -0.69
VPS54-203ENST00000409558 TIMM23O14925 209 aa10.76□□□□□ -0.69
VPS54-203ENST00000409558 TMEM68Q96MH6 324 aa10.76□□□□□ -0.69
VPS54-203ENST00000409558 IL36BQ9NZH7 164 aa10.76□□□□□ -0.69
VPS54-203ENST00000409558 TMSB15BA0A087X1C1 80 aa10.75□□□□□ -0.69
VPS54-203ENST00000409558 C22orf46C9J442 243 aa10.75□□□□□ -0.69
VPS54-203ENST00000409558 SIAH2O43255 324 aa10.75□□□□□ -0.69
VPS54-203ENST00000409558 C2orf83Q53S99 150 aa10.75□□□□□ -0.69
VPS54-203ENST00000409558 TMEM186Q96B77 213 aa10.75□□□□□ -0.69
VPS54-203ENST00000409558 FAM90A9PA6NNJ1 464 aa10.75□□□□□ -0.69
VPS54-203ENST00000409558 AMTP48728 403 aa10.75□□□□□ -0.69
VPS54-203ENST00000409558 PDPNQ86YL7 162 aa10.75□□□□□ -0.69
VPS54-203ENST00000409558 BTF3L4Q96K17 158 aa10.75□□□□□ -0.69
VPS54-203ENST00000409558 TMPRSS3P57727 454 aa10.75□□□□□ -0.69
VPS54-203ENST00000409558 IGFL4Q6B9Z1 124 aa10.75□□□□□ -0.69
VPS54-203ENST00000409558 VSTM2AQ8TAG5 236 aa10.75□□□□□ -0.69
VPS54-203ENST00000409558 C22orf15Q8WYQ4 148 aa10.75□□□□□ -0.69
VPS54-203ENST00000409558 A0A1B0GWJ7 208 aa10.74□□□□□ -0.69
VPS54-203ENST00000409558 TMEM11P17152 192 aa10.74□□□□□ -0.69
VPS54-203ENST00000409558 MEF2CQ06413 473 aaPredicted RBP10.74□□□□□ -0.69
VPS54-203ENST00000409558 PYGO2Q9BRQ0 406 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms