RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 CGB1A6NKQ9 187 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 USF1P22415 310 aaPredicted RBP16.67■□□□□ 0.26
CLK3-202ENST00000395066 DLX1P56177 255 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 RPL8P62917 257 aaKnown RBP16.67■□□□□ 0.26
CLK3-202ENST00000395066 OR1L8Q8NGR8 309 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 OR5B3Q8NH48 314 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 LINC00574Q9H8X3 128 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 TPSG1Q9NRR2 321 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 LINC00312Q9Y6C7 94 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 A0A1W2PRE2 83 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 TM4SF5O14894 197 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 TMEM200BQ69YZ2 307 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 LYPD2Q6UXB3 125 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 KLHDC1Q8N7A1 406 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 NPIPB3Q92617 1050 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 RITA1Q96K30 269 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 ZNF331Q9NQX6 463 aaPredicted RBP16.67■□□□□ 0.26
CLK3-202ENST00000395066 ZNF292O60281 2723 aa16.67■□□□□ 0.26
CLK3-202ENST00000395066 PSMB11A5LHX3 300 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 NDUFB8O95169 186 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 C19orf24Q9BVV8 132 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 APOA2P02652 100 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 SLAQ13239 276 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 TEX36Q5VZQ5 186 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 CCL17Q92583 94 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 ZNF355PQ9NSJ1 428 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 POLEQ07864 2286 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 ZZEF1O43149 2961 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 RELNP78509 3460 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 ZFHX2Q9C0A1 2572 aaPredicted RBP16.66■□□□□ 0.26
CLK3-202ENST00000395066 IGHV3-72A0A0B4J1Y9 119 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 ATOH7Q8N100 152 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 RBMXL3Q8N7X1 1067 aaKnown RBP16.66■□□□□ 0.26
CLK3-202ENST00000395066 C18orf32Q8TCD1 76 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 FLYWCH2Q96CP2 140 aaKnown RBP16.66■□□□□ 0.26
CLK3-202ENST00000395066 ZNF714Q96N38 554 aa16.66■□□□□ 0.26
CLK3-202ENST00000395066 MRPL27Q9P0M9 148 aaKnown RBP16.66■□□□□ 0.26
CLK3-202ENST00000395066 DLL1O00548 723 aa16.65■□□□□ 0.26
CLK3-202ENST00000395066 PATE2Q6UY27 113 aa16.65■□□□□ 0.26
CLK3-202ENST00000395066 PNKDQ8N490 385 aa16.65■□□□□ 0.26
CLK3-202ENST00000395066 ADIPOQQ15848 244 aa16.65■□□□□ 0.26
CLK3-202ENST00000395066 PRR27Q6MZM9 219 aa16.65■□□□□ 0.26
CLK3-202ENST00000395066 OR10X1Q8NGY0 326 aa16.65■□□□□ 0.26
CLK3-202ENST00000395066 NKX6-3A6NJ46 265 aa16.64■□□□□ 0.25
CLK3-202ENST00000395066 GNG5P63218 68 aa16.64■□□□□ 0.25
CLK3-202ENST00000395066 ERHP84090 104 aaKnown RBP16.64■□□□□ 0.25
CLK3-202ENST00000395066 Q6ZS92 163 aa16.64■□□□□ 0.25
CLK3-202ENST00000395066 OSR1Q8TAX0 266 aaPredicted RBP16.64■□□□□ 0.25
CLK3-202ENST00000395066 CLEC7AQ9BXN2 247 aa16.64■□□□□ 0.25
CLK3-202ENST00000395066 IGHV3-21A0A0B4J1V1 117 aa16.64■□□□□ 0.25
CLK3-202ENST00000395066 COX7A2P2O60397 106 aa16.64■□□□□ 0.25
CLK3-202ENST00000395066 GAL3ST2Q9H3Q3 398 aa16.64■□□□□ 0.25
CLK3-202ENST00000395066 ZNF430Q9H8G1 570 aaPredicted RBP16.64■□□□□ 0.25
CLK3-202ENST00000395066 TPRP12270 2363 aaKnown RBP16.63■□□□□ 0.25
CLK3-202ENST00000395066 MOSP00540 346 aa16.63■□□□□ 0.25
CLK3-202ENST00000395066 LCN12Q6JVE5 192 aa16.63■□□□□ 0.25
CLK3-202ENST00000395066 OR5AN1Q8NGI8 311 aa16.63■□□□□ 0.25
CLK3-202ENST00000395066 BSPH1Q075Z2 132 aa16.63■□□□□ 0.25
CLK3-202ENST00000395066 MAJINQ3KP22 176 aa16.63■□□□□ 0.25
CLK3-202ENST00000395066 WIPF2Q8TF74 440 aaPredicted RBP16.63■□□□□ 0.25
CLK3-202ENST00000395066 C17orf100A8MU93 164 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 SLC25A17O43808 307 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 CEACAM8P31997 349 aaPredicted RBP16.62■□□□□ 0.25
CLK3-202ENST00000395066 PMCHL1Q16048 86 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 C21orf62-AS1Q17RA5 79 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 RASL11AQ6T310 242 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 AMMECR1Q9Y4X0 333 aaPredicted RBP16.62■□□□□ 0.25
CLK3-202ENST00000395066 IGKV1D-37A0A075B6S9 117 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 C20orf202A1L168 122 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 TSPOP30536 169 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 TNXAQ16473 311 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 HCP5Q6MZN7 132 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 SPACA3Q8IXA5 215 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 PAXXQ9BUH6 204 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 SAP30LQ9HAJ7 183 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 RPH3ALQ9UNE2 315 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 APC2O95996 2303 aa16.62■□□□□ 0.25
CLK3-202ENST00000395066 H3BTX0 84 aa16.61■□□□□ 0.25
CLK3-202ENST00000395066 C3orf36Q3SXR2 165 aa16.61■□□□□ 0.25
CLK3-202ENST00000395066 C10orf113Q5VZT2 155 aa16.61■□□□□ 0.25
CLK3-202ENST00000395066 TMEM108Q6UXF1 575 aa16.61■□□□□ 0.25
CLK3-202ENST00000395066 ORAOV1Q8WV07 137 aa16.61■□□□□ 0.25
CLK3-202ENST00000395066 MRPL32Q9BYC8 188 aaKnown RBP16.61■□□□□ 0.25
CLK3-202ENST00000395066 A0A0G2JNJ9 132 aa16.61■□□□□ 0.25
CLK3-202ENST00000395066 CORTO00230 105 aa16.61■□□□□ 0.25
CLK3-202ENST00000395066 HSBP1O75506 76 aa16.61■□□□□ 0.25
CLK3-202ENST00000395066 MFAP2P55001 183 aa16.61■□□□□ 0.25
CLK3-202ENST00000395066 TMEM177Q53S58 311 aa16.61■□□□□ 0.25
CLK3-202ENST00000395066 IGFL3Q6UXB1 125 aa16.61■□□□□ 0.25
CLK3-202ENST00000395066 BLNKQ8WV28 456 aa16.61■□□□□ 0.25
CLK3-202ENST00000395066 Q9UFV3 132 aa16.61■□□□□ 0.25
CLK3-202ENST00000395066 TNFRSF1AP19438 455 aa16.6■□□□□ 0.25
CLK3-202ENST00000395066 MBD6Q96DN6 1003 aa16.6■□□□□ 0.25
CLK3-202ENST00000395066 CTSZQ9UBR2 303 aa16.6■□□□□ 0.25
CLK3-202ENST00000395066 IGLV2-23P01705 113 aa16.6■□□□□ 0.25
CLK3-202ENST00000395066 ORM2P19652 201 aa16.6■□□□□ 0.25
CLK3-202ENST00000395066 HINT1P49773 126 aaPredicted RBP16.6■□□□□ 0.25
CLK3-202ENST00000395066 ATP5IP56385 69 aaPredicted RBP16.6■□□□□ 0.25
CLK3-202ENST00000395066 ZNF329Q86UD4 541 aa16.6■□□□□ 0.25
CLK3-202ENST00000395066 MRPS16Q9Y3D3 137 aaKnown RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms