RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 NUP37Q8NFH4 326 aa17.74■□□□□ 0.43
SHMT1-201ENST00000316694 VSTM2AQ8TAG5 236 aa17.74■□□□□ 0.43
SHMT1-201ENST00000316694 CEACAM8P31997 349 aaPredicted RBP17.74■□□□□ 0.43
SHMT1-201ENST00000316694 GNG5P63218 68 aa17.74■□□□□ 0.43
SHMT1-201ENST00000316694 OR4B1Q8NGF8 309 aa17.74■□□□□ 0.43
SHMT1-201ENST00000316694 CCL17Q92583 94 aa17.74■□□□□ 0.43
SHMT1-201ENST00000316694 IGKV1D-37A0A075B6S9 117 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 SUB1P53999 127 aaKnown RBP eCLIP17.73■□□□□ 0.43
SHMT1-201ENST00000316694 ADIPOQQ15848 244 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 LHFPL4Q7Z7J7 247 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 SAP30LQ9HAJ7 183 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 ZGRF1Q86YA3 2104 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 CUL9Q8IWT3 2517 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 SLC25A17O43808 307 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 LINC00305Q7Z4B0 112 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 PDPNQ86YL7 162 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 NUDT10Q8NFP7 164 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 TSKUQ8WUA8 353 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 NUDT11Q96G61 164 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 SGK494Q96LW2 274 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 TPSG1Q9NRR2 321 aa17.73■□□□□ 0.43
SHMT1-201ENST00000316694 ANKRD11Q6UB99 2663 aaPredicted RBP17.73■□□□□ 0.43
SHMT1-201ENST00000316694 LYPD2Q6UXB3 125 aa17.72■□□□□ 0.43
SHMT1-201ENST00000316694 FXYD5Q96DB9 178 aa17.72■□□□□ 0.43
SHMT1-201ENST00000316694 PPIAL4EA0A075B759 164 aa17.72■□□□□ 0.43
SHMT1-201ENST00000316694 PPIAL4DF5H284 164 aa17.72■□□□□ 0.43
SHMT1-201ENST00000316694 INS-IGF2F8WCM5 200 aa17.72■□□□□ 0.43
SHMT1-201ENST00000316694 PPIAL4FP0DN26 164 aa17.72■□□□□ 0.43
SHMT1-201ENST00000316694 ORM2P19652 201 aa17.72■□□□□ 0.43
SHMT1-201ENST00000316694 SPATA45Q537H7 98 aa17.72■□□□□ 0.43
SHMT1-201ENST00000316694 NUP35Q8NFH5 326 aa17.72■□□□□ 0.43
SHMT1-201ENST00000316694 BLNKQ8WV28 456 aa17.72■□□□□ 0.43
SHMT1-201ENST00000316694 SSUH2Q9Y2M2 353 aa17.72■□□□□ 0.43
SHMT1-201ENST00000316694 WASHC3Q9Y3C0 194 aa17.72■□□□□ 0.43
SHMT1-201ENST00000316694 PPIAL4AQ9Y536 164 aa17.72■□□□□ 0.43
SHMT1-201ENST00000316694 PIEZO2Q9H5I5 2752 aa17.71■□□□□ 0.43
SHMT1-201ENST00000316694 MOSP00540 346 aa17.71■□□□□ 0.43
SHMT1-201ENST00000316694 IGLV2-23P01705 113 aa17.71■□□□□ 0.43
SHMT1-201ENST00000316694 C3orf79P0CE67 100 aa17.71■□□□□ 0.43
SHMT1-201ENST00000316694 TBR1Q16650 682 aa17.71■□□□□ 0.43
SHMT1-201ENST00000316694 MRPL52Q86TS9 123 aaKnown RBP17.71■□□□□ 0.43
SHMT1-201ENST00000316694 NIT1Q86X76 327 aa17.71■□□□□ 0.43
SHMT1-201ENST00000316694 OR4A5Q8NH83 315 aa17.71■□□□□ 0.43
SHMT1-201ENST00000316694 C18orf32Q8TCD1 76 aa17.71■□□□□ 0.43
SHMT1-201ENST00000316694 RITA1Q96K30 269 aa17.71■□□□□ 0.43
SHMT1-201ENST00000316694 RPH3ALQ9UNE2 315 aa17.71■□□□□ 0.43
SHMT1-201ENST00000316694 A0A1W2PPI3 338 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 DPRXA6NFQ7 191 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 CRYABP02511 175 aaKnown RBP17.7■□□□□ 0.42
SHMT1-201ENST00000316694 BSPH1Q075Z2 132 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 OR1B1Q8NGR6 318 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 FAM57AQ8TBR7 257 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 TMEM186Q96B77 213 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 MBD6Q96DN6 1003 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 GRAMD2BQ96HH9 432 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 WNT10AQ9GZT5 417 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 IGHV3-72A0A0B4J1Y9 119 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 NDUFB3O43676 98 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 ENSAO43768 121 aaKnown RBP17.7■□□□□ 0.42
SHMT1-201ENST00000316694 APELAP0DMC3 54 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 UBE2G1P62253 170 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 GDF5OSQ5U4N7 250 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 RUSC1-AS1Q66K80 236 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 HCP5Q6MZN7 132 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 FAM231DQ6ZW35 169 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 BORCS7Q96B45 105 aa17.7■□□□□ 0.42
SHMT1-201ENST00000316694 SPTBN2O15020 2390 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 TMEM178BH3BS89 294 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 CORTO00230 105 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 FSTL3O95633 263 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 CAMPP49913 170 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 ACACAQ13085 2346 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 LRRC10Q5BKY1 277 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 THAP8Q8NA92 274 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 SSBP4Q9BWG4 385 aaPredicted RBP17.69■□□□□ 0.42
SHMT1-201ENST00000316694 C16orf97H3BN30 126 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 KLK10O43240 276 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 SLC25A5P05141 298 aaKnown RBP17.69■□□□□ 0.42
SHMT1-201ENST00000316694 VMA21Q3ZAQ7 101 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 PRR31Q5SQ13 230 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 SPACA3Q8IXA5 215 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 TMEM208Q9BTX3 173 aa17.69■□□□□ 0.42
SHMT1-201ENST00000316694 GPR6P46095 362 aaPredicted RBP17.68■□□□□ 0.42
SHMT1-201ENST00000316694 PRRX1P54821 245 aa17.68■□□□□ 0.42
SHMT1-201ENST00000316694 WIPF2Q8TF74 440 aaPredicted RBP17.68■□□□□ 0.42
SHMT1-201ENST00000316694 TNFRSF19Q9NS68 423 aa17.68■□□□□ 0.42
SHMT1-201ENST00000316694 HIGD1CA8MV81 97 aa17.67■□□□□ 0.42
SHMT1-201ENST00000316694 CTRLP40313 264 aa17.67■□□□□ 0.42
SHMT1-201ENST00000316694 ZNF841Q6ZN19 808 aa17.67■□□□□ 0.42
SHMT1-201ENST00000316694 C19orf35Q6ZS72 473 aa17.67■□□□□ 0.42
SHMT1-201ENST00000316694 ATOH7Q8N100 152 aa17.67■□□□□ 0.42
SHMT1-201ENST00000316694 ST6GALNAC6Q969X2 333 aa17.67■□□□□ 0.42
SHMT1-201ENST00000316694 SH3BGRL2Q9UJC5 107 aa17.67■□□□□ 0.42
SHMT1-201ENST00000316694 IGHV3-21A0A0B4J1V1 117 aa17.67■□□□□ 0.42
SHMT1-201ENST00000316694 C22orf46C9J442 243 aa17.67■□□□□ 0.42
SHMT1-201ENST00000316694 A0A0G2JNJ9 132 aa17.66■□□□□ 0.42
SHMT1-201ENST00000316694 CYB5R2Q6BCY4 276 aa17.66■□□□□ 0.42
SHMT1-201ENST00000316694 RASL11AQ6T310 242 aa17.66■□□□□ 0.42
SHMT1-201ENST00000316694 LPAR2Q9HBW0 351 aa17.66■□□□□ 0.42
SHMT1-201ENST00000316694 CTSZQ9UBR2 303 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms