RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 C17orf58Q2M2W7 97 aa13.78□□□□□ -0.2
FOXA1-201ENST00000250448 FBXL19-AS1Q494R0 122 aa13.78□□□□□ -0.2
FOXA1-201ENST00000250448 SLC35E1Q96K37 410 aa13.78□□□□□ -0.2
FOXA1-201ENST00000250448 A0A1W2PS18 150 aa13.77□□□□□ -0.2
FOXA1-201ENST00000250448 VSTM5A8MXK1 200 aa13.77□□□□□ -0.2
FOXA1-201ENST00000250448 NDUFS8O00217 210 aa13.77□□□□□ -0.2
FOXA1-201ENST00000250448 ISLRO14498 428 aa13.77□□□□□ -0.2
FOXA1-201ENST00000250448 CTRLP40313 264 aa13.77□□□□□ -0.2
FOXA1-201ENST00000250448 PLEKHA3Q9HB20 300 aa13.77□□□□□ -0.2
FOXA1-201ENST00000250448 MYO18BQ8IUG5 2567 aa13.77□□□□□ -0.2
FOXA1-201ENST00000250448 ZNF253O75346 499 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 IGLV2-8P01709 118 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 PRB1P04280 392 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 CGB3P0DN86 165 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 CGB7P0DN87 165 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 SPATA45Q537H7 98 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 MOB3BQ86TA1 216 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 C17orf100A8MU93 164 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 BMPR1BO00238 502 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 HLA-DQA1P01909 254 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 SRIP30626 198 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 POU2AF1Q16633 256 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 MRPL54Q6P161 138 aaKnown RBP13.77□□□□□ -0.21
FOXA1-201ENST00000250448 LHFPL4Q7Z7J7 247 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 PRNDQ9UKY0 176 aa13.77□□□□□ -0.21
FOXA1-201ENST00000250448 TAS2R45P59539 299 aa13.76□□□□□ -0.21
FOXA1-201ENST00000250448 SUMO1P63165 101 aaKnown RBP13.76□□□□□ -0.21
FOXA1-201ENST00000250448 IBA57Q5T440 356 aaKnown RBP13.76□□□□□ -0.21
FOXA1-201ENST00000250448 ADTRPQ96IZ2 230 aa13.76□□□□□ -0.21
FOXA1-201ENST00000250448 IGF2BP2-AS1Q96M15 143 aa13.76□□□□□ -0.21
FOXA1-201ENST00000250448 IGKV1OR2-108A0A075B7D4 117 aa13.76□□□□□ -0.21
FOXA1-201ENST00000250448 J3QR06 171 aa13.76□□□□□ -0.21
FOXA1-201ENST00000250448 ZNF324O75467 553 aaPredicted RBP13.76□□□□□ -0.21
FOXA1-201ENST00000250448 MGST1P10620 155 aaKnown RBP13.76□□□□□ -0.21
FOXA1-201ENST00000250448 GATA2P23769 480 aaPredicted RBP13.76□□□□□ -0.21
FOXA1-201ENST00000250448 CFHR2P36980 270 aa13.76□□□□□ -0.21
FOXA1-201ENST00000250448 PRCDQ00LT1 54 aa13.76□□□□□ -0.21
FOXA1-201ENST00000250448 COL5A1-AS1Q5SY13 56 aa13.76□□□□□ -0.21
FOXA1-201ENST00000250448 LYG1Q8N1E2 194 aa13.76□□□□□ -0.21
FOXA1-201ENST00000250448 CDC42EP3Q9UKI2 254 aa13.76□□□□□ -0.21
FOXA1-201ENST00000250448 SMIM27A0A1W2PRY6 76 aa13.75□□□□□ -0.21
FOXA1-201ENST00000250448 TNFSF4P23510 183 aa13.75□□□□□ -0.21
FOXA1-201ENST00000250448 PPOXP50336 477 aa13.75□□□□□ -0.21
FOXA1-201ENST00000250448 RAB9BQ9NP90 201 aa13.75□□□□□ -0.21
FOXA1-201ENST00000250448 DYNLRB1Q9NP97 96 aa13.75□□□□□ -0.21
FOXA1-201ENST00000250448 RAI1Q7Z5J4 1906 aaPredicted RBP13.75□□□□□ -0.21
FOXA1-201ENST00000250448 MMP23AO75900 390 aa13.75□□□□□ -0.21
FOXA1-201ENST00000250448 LHBP01229 141 aa13.75□□□□□ -0.21
FOXA1-201ENST00000250448 RTL8BQ17RB0 113 aa13.75□□□□□ -0.21
FOXA1-201ENST00000250448 RNF7Q9UBF6 113 aa13.75□□□□□ -0.21
FOXA1-201ENST00000250448 UTP20O75691 2785 aaKnown RBP13.74□□□□□ -0.21
FOXA1-201ENST00000250448 A0A1W2PRE2 83 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 SERTAD4Q9NUC0 356 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 ZNF257Q9Y2Q1 563 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 ZNF462Q96JM2 2506 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 DSCAML1Q8TD84 2053 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 KBTBD11-OT1A0A1B0GTJ5 212 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 UPK2O00526 184 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 TFPI2P48307 235 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 ODF1Q14990 250 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 SMIM15Q7Z3B0 74 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 NIT1Q86X76 327 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 PNKDQ8N490 385 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 C19orf24Q9BVV8 132 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 GSX1Q9H4S2 264 aaPredicted RBP13.74□□□□□ -0.21
FOXA1-201ENST00000250448 CLEC5AQ9NY25 188 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 UQCR10Q9UDW1 63 aa13.74□□□□□ -0.21
FOXA1-201ENST00000250448 USP9XQ93008 2570 aaPredicted RBP13.74□□□□□ -0.21
FOXA1-201ENST00000250448 GATA4P43694 442 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 CCL17Q92583 94 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 SAP30LQ9HAJ7 183 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 TANC2Q9HCD6 1990 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 IZUMO1RA6ND01 250 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 REG1AP05451 166 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 C3orf79P0CE67 100 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 C8orf88P0DMB2 117 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 ZNF439Q8NDP4 499 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 A0A1W2PN81 502 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 APCSP02743 223 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 C2orf83Q53S99 150 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 OR9G1Q8NH87 305 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 CCL13Q99616 98 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 SLC35D1Q9NTN3 355 aa13.73□□□□□ -0.21
FOXA1-201ENST00000250448 TACC2O95359 2948 aa13.72□□□□□ -0.21
FOXA1-201ENST00000250448 USF1P22415 310 aaPredicted RBP13.72□□□□□ -0.21
FOXA1-201ENST00000250448 PRRX1P54821 245 aa13.72□□□□□ -0.21
FOXA1-201ENST00000250448 SSX8Q7RTT4 187 aa13.72□□□□□ -0.21
FOXA1-201ENST00000250448 TSKUQ8WUA8 353 aa13.72□□□□□ -0.21
FOXA1-201ENST00000250448 COMMD5Q9GZQ3 224 aa13.72□□□□□ -0.21
FOXA1-201ENST00000250448 LYNX1G3V0Z9 82 aa13.72□□□□□ -0.21
FOXA1-201ENST00000250448 IGLC2P0DOY2 106 aa13.72□□□□□ -0.21
FOXA1-201ENST00000250448 IGLC3P0DOY3 106 aa13.72□□□□□ -0.21
FOXA1-201ENST00000250448 LYNX1P0DP58 116 aa13.72□□□□□ -0.21
FOXA1-201ENST00000250448 APOBEC3AP31941 199 aaPredicted RBP13.72□□□□□ -0.21
FOXA1-201ENST00000250448 MMDQ15546 238 aa13.72□□□□□ -0.21
FOXA1-201ENST00000250448 FAM216BQ8N7L0 139 aa13.72□□□□□ -0.21
FOXA1-201ENST00000250448 ITLN2Q8WWU7 325 aaPredicted RBP13.72□□□□□ -0.21
FOXA1-201ENST00000250448 NUDT11Q96G61 164 aa13.72□□□□□ -0.21
FOXA1-201ENST00000250448 SLC25A33Q9BSK2 321 aa13.72□□□□□ -0.21
FOXA1-201ENST00000250448 ASH1LQ9NR48 2969 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms