RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 MRPL52Q86TS9 123 aaKnown RBP15.09■□□□□ 0.01
CPSF3-201ENST00000238112 TMEM68Q96MH6 324 aa15.09■□□□□ 0.01
CPSF3-201ENST00000238112 A0A1W2PPI3 338 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 VSTM5A8MXK1 200 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 ENSAO43768 121 aaKnown RBP15.08■□□□□ 0
CPSF3-201ENST00000238112 ZNF324O75467 553 aaPredicted RBP15.08■□□□□ 0
CPSF3-201ENST00000238112 PLAUP00749 431 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 ASPHD1Q5U4P2 390 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 ETFRF1Q6IPR1 90 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 RASL11AQ6T310 242 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 GRAMD2BQ96HH9 432 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 TPSG1Q9NRR2 321 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 MRPL36Q9P0J6 103 aaKnown RBP15.08■□□□□ 0
CPSF3-201ENST00000238112 THBDP07204 575 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 TBR1Q16650 682 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 PRR27Q6MZM9 219 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 STXBP6Q8NFX7 210 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 OR4B1Q8NGF8 309 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 CTSZQ9UBR2 303 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 RNF114Q9Y508 228 aa15.08■□□□□ 0
CPSF3-201ENST00000238112 ORM2P19652 201 aa15.07■□□□□ 0
CPSF3-201ENST00000238112 LOXP28300 417 aaPredicted RBP15.07■□□□□ 0
CPSF3-201ENST00000238112 ZNF137PP52743 207 aa15.07■□□□□ 0
CPSF3-201ENST00000238112 UBE2G1P62253 170 aa15.07■□□□□ 0
CPSF3-201ENST00000238112 NUDT10Q8NFP7 164 aa15.07■□□□□ 0
CPSF3-201ENST00000238112 WIPF2Q8TF74 440 aaPredicted RBP15.07■□□□□ 0
CPSF3-201ENST00000238112 PERPQ96FX8 193 aa15.07■□□□□ 0
CPSF3-201ENST00000238112 NUDT11Q96G61 164 aa15.07■□□□□ 0
CPSF3-201ENST00000238112 CHRDL1Q9BU40 450 aa15.07■□□□□ 0
CPSF3-201ENST00000238112 SH3BGRL2Q9UJC5 107 aa15.07■□□□□ 0
CPSF3-201ENST00000238112 FSTL3O95633 263 aa15.06■□□□□ 0
CPSF3-201ENST00000238112 MFAP2P55001 183 aa15.06■□□□□ 0
CPSF3-201ENST00000238112 SLAQ13239 276 aa15.06■□□□□ 0
CPSF3-201ENST00000238112 OR1B1Q8NGR6 318 aa15.06■□□□□ 0
CPSF3-201ENST00000238112 C22orf15Q8WYQ4 148 aa15.06■□□□□ 0
CPSF3-201ENST00000238112 MBD6Q96DN6 1003 aa15.06■□□□□ 0
CPSF3-201ENST00000238112 TNFRSF19Q9NS68 423 aa15.06■□□□□ 0
CPSF3-201ENST00000238112 TNFRSF13BO14836 293 aaPredicted RBP15.06■□□□□ 0
CPSF3-201ENST00000238112 MOSP00540 346 aa15.06■□□□□ 0
CPSF3-201ENST00000238112 LGALS7P47929 136 aa15.06■□□□□ 0
CPSF3-201ENST00000238112 GNG5P63218 68 aa15.06■□□□□ 0
CPSF3-201ENST00000238112 RITA1Q96K30 269 aa15.06■□□□□ 0
CPSF3-201ENST00000238112 DYNLRB1Q9NP97 96 aa15.06■□□□□ 0
CPSF3-201ENST00000238112 HIST1H1EP10412 219 aaKnown RBP15.05■□□□□ 0
CPSF3-201ENST00000238112 TMEM155Q4W5P6 130 aa15.05■□□□□ 0
CPSF3-201ENST00000238112 HCP5Q6MZN7 132 aa15.05■□□□□ 0
CPSF3-201ENST00000238112 NUP35Q8NFH5 326 aa15.05■□□□□ 0
CPSF3-201ENST00000238112 BLNKQ8WV28 456 aa15.05■□□□□ 0
CPSF3-201ENST00000238112 IGHV3-72A0A0B4J1Y9 119 aa15.05■□□□□ -0
CPSF3-201ENST00000238112 SLC25A5P05141 298 aaKnown RBP15.05■□□□□ -0
CPSF3-201ENST00000238112 IGHV1-8P0DP01 117 aa15.05■□□□□ -0
CPSF3-201ENST00000238112 DLX6P56179 175 aa15.05■□□□□ -0
CPSF3-201ENST00000238112 EPDR1Q9UM22 224 aa15.05■□□□□ -0
CPSF3-201ENST00000238112 Q8N976 141 aa15.04■□□□□ -0
CPSF3-201ENST00000238112 TSKUQ8WUA8 353 aa15.04■□□□□ -0
CPSF3-201ENST00000238112 RNASE6Q93091 150 aaKnown RBP15.04■□□□□ -0
CPSF3-201ENST00000238112 DMXL1Q9Y485 3027 aa15.04■□□□□ -0
CPSF3-201ENST00000238112 TTC28Q96AY4 2481 aa15.04■□□□□ -0
CPSF3-201ENST00000238112 IGLC7A0M8Q6 106 aa15.04■□□□□ -0
CPSF3-201ENST00000238112 C22orf46C9J442 243 aa15.04■□□□□ -0
CPSF3-201ENST00000238112 RPLP1P05386 114 aaKnown RBP15.04■□□□□ -0
CPSF3-201ENST00000238112 NTF3P20783 257 aa15.04■□□□□ -0
CPSF3-201ENST00000238112 G0S2P27469 103 aa15.04■□□□□ -0
CPSF3-201ENST00000238112 MYCNOSP40205 109 aa15.04■□□□□ -0
CPSF3-201ENST00000238112 SSX8Q7RTT4 187 aa15.04■□□□□ -0
CPSF3-201ENST00000238112 C18orf32Q8TCD1 76 aa15.04■□□□□ -0
CPSF3-201ENST00000238112 MRPL27Q9P0M9 148 aaKnown RBP15.04■□□□□ -0
CPSF3-201ENST00000238112 TNXAQ16473 311 aa15.03■□□□□ -0
CPSF3-201ENST00000238112 FAM19A2Q8N3H0 131 aa15.03■□□□□ -0
CPSF3-201ENST00000238112 BORCS7Q96B45 105 aa15.03■□□□□ -0
CPSF3-201ENST00000238112 TRGV9Q99603 122 aa15.03■□□□□ -0
CPSF3-201ENST00000238112 KAAG1Q9UBP8 84 aa15.03■□□□□ -0
CPSF3-201ENST00000238112 RPH3ALQ9UNE2 315 aa15.03■□□□□ -0
CPSF3-201ENST00000238112 NAV3Q8IVL0 2385 aa15.03■□□□□ -0
CPSF3-201ENST00000238112 PGPA6NDG6 321 aa15.03■□□□□ -0
CPSF3-201ENST00000238112 RPL27AP46776 148 aaKnown RBP15.03■□□□□ -0
CPSF3-201ENST00000238112 MRGPRG-AS1Q2M3A8 158 aa15.03■□□□□ -0
CPSF3-201ENST00000238112 TEX45Q8NA69 505 aa15.03■□□□□ -0
CPSF3-201ENST00000238112 TMEM133Q9H2Q1 129 aa15.03■□□□□ -0
CPSF3-201ENST00000238112 CEP250Q9BV73 2442 aa15.02■□□□□ -0
CPSF3-201ENST00000238112 LAMA5O15230 3695 aa15.02■□□□□ -0
CPSF3-201ENST00000238112 HIGD1CA8MV81 97 aa15.02■□□□□ -0
CPSF3-201ENST00000238112 CRYGCP07315 174 aa15.02■□□□□ -0
CPSF3-201ENST00000238112 C19orf35Q6ZS72 473 aa15.02■□□□□ -0
CPSF3-201ENST00000238112 NIT1Q86X76 327 aa15.02■□□□□ -0
CPSF3-201ENST00000238112 ARFGEF3Q5TH69 2177 aa15.02□□□□□ -0.01
CPSF3-201ENST00000238112 C3orf79P0CE67 100 aa15.01□□□□□ -0.01
CPSF3-201ENST00000238112 PRRX1P54821 245 aa15.01□□□□□ -0.01
CPSF3-201ENST00000238112 ZNF124Q15973 351 aa15.01□□□□□ -0.01
CPSF3-201ENST00000238112 SPATA45Q537H7 98 aa15.01□□□□□ -0.01
CPSF3-201ENST00000238112 GFRALQ6UXV0 394 aa15.01□□□□□ -0.01
CPSF3-201ENST00000238112 SPACA3Q8IXA5 215 aa15.01□□□□□ -0.01
CPSF3-201ENST00000238112 SMIM12Q96EX1 92 aa15.01□□□□□ -0.01
CPSF3-201ENST00000238112 SGK494Q96LW2 274 aa15.01□□□□□ -0.01
CPSF3-201ENST00000238112 HYPMO75409 117 aa15.01□□□□□ -0.01
CPSF3-201ENST00000238112 ROS1P08922 2347 aa15.01□□□□□ -0.01
CPSF3-201ENST00000238112 NBEAP1P0C6P0 100 aa15.01□□□□□ -0.01
CPSF3-201ENST00000238112 APELAP0DMC3 54 aa15.01□□□□□ -0.01
CPSF3-201ENST00000238112 RUSC1-AS1Q66K80 236 aa15.01□□□□□ -0.01
CPSF3-201ENST00000238112 C7orf69Q9H7B7 122 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms