RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 OR2K2Q8NGT1 345 aa15.73■□□□□ 0.11
CLN3-240ENST00000631023 DTD1Q8TEA8 209 aa15.73■□□□□ 0.11
CLN3-240ENST00000631023 TECRQ9NZ01 308 aaKnown RBP15.73■□□□□ 0.11
CLN3-240ENST00000631023 RPS10-NUDT3A0A1W2PQS6 291 aa15.72■□□□□ 0.11
CLN3-240ENST00000631023 NDUFA4O00483 81 aa15.72■□□□□ 0.11
CLN3-240ENST00000631023 MED6O75586 246 aa15.72■□□□□ 0.11
CLN3-240ENST00000631023 IFNA10P01566 189 aa15.72■□□□□ 0.11
CLN3-240ENST00000631023 NPY1RP25929 384 aa15.72■□□□□ 0.11
CLN3-240ENST00000631023 ADMP35318 185 aa15.72■□□□□ 0.11
CLN3-240ENST00000631023 UNQ9165/PRO28630Q6UXU0 137 aa15.72■□□□□ 0.11
CLN3-240ENST00000631023 RNASEH2CQ8TDP1 164 aaKnown RBP15.72■□□□□ 0.11
CLN3-240ENST00000631023 MARC2Q969Z3 335 aa15.72■□□□□ 0.11
CLN3-240ENST00000631023 NUDT15Q9NV35 164 aa15.72■□□□□ 0.11
CLN3-240ENST00000631023 TBC1D24Q9ULP9 559 aa15.72■□□□□ 0.11
CLN3-240ENST00000631023 TRAV6A0A075B6T7 132 aa15.71■□□□□ 0.11
CLN3-240ENST00000631023 TMEM213A2RRL7 107 aa15.71■□□□□ 0.11
CLN3-240ENST00000631023 ATP5IP56385 69 aaPredicted RBP15.71■□□□□ 0.11
CLN3-240ENST00000631023 SCGB2A1O75556 95 aa15.7■□□□□ 0.1
CLN3-240ENST00000631023 H2AFB2P0C5Z0 115 aa15.7■□□□□ 0.1
CLN3-240ENST00000631023 TM4SF20Q53R12 229 aa15.7■□□□□ 0.1
CLN3-240ENST00000631023 ETFRF1Q6IPR1 90 aa15.7■□□□□ 0.1
CLN3-240ENST00000631023 ADAMTSL5Q6ZMM2 481 aa15.7■□□□□ 0.1
CLN3-240ENST00000631023 MITD1Q8WV92 249 aa15.7■□□□□ 0.1
CLN3-240ENST00000631023 TMEM190Q8WZ59 177 aa15.7■□□□□ 0.1
CLN3-240ENST00000631023 ADAP1O75689 374 aa15.7■□□□□ 0.1
CLN3-240ENST00000631023 DEFB114Q30KQ6 69 aa15.7■□□□□ 0.1
CLN3-240ENST00000631023 UXS1Q8NBZ7 420 aa15.7■□□□□ 0.1
CLN3-240ENST00000631023 C20orf24Q9BUV8 137 aa15.7■□□□□ 0.1
CLN3-240ENST00000631023 FNDC4Q9H6D8 234 aaPredicted RBP15.7■□□□□ 0.1
CLN3-240ENST00000631023 DAZ1Q9NQZ3 744 aaKnown RBP15.7■□□□□ 0.1
CLN3-240ENST00000631023 MRPL27Q9P0M9 148 aaKnown RBP15.7■□□□□ 0.1
CLN3-240ENST00000631023 LSM4Q9Y4Z0 139 aaKnown RBP15.7■□□□□ 0.1
CLN3-240ENST00000631023 SLC25A4P12235 298 aa15.69■□□□□ 0.1
CLN3-240ENST00000631023 OR4X1Q8NH49 305 aa15.69■□□□□ 0.1
CLN3-240ENST00000631023 ENKURQ8TC29 256 aa15.69■□□□□ 0.1
CLN3-240ENST00000631023 CIB3Q96Q77 187 aaPredicted RBP15.69■□□□□ 0.1
CLN3-240ENST00000631023 K7EMT4 169 aa15.68■□□□□ 0.1
CLN3-240ENST00000631023 TMEM50AO95807 157 aa15.68■□□□□ 0.1
CLN3-240ENST00000631023 MLANAQ16655 118 aa15.68■□□□□ 0.1
CLN3-240ENST00000631023 CD300EQ496F6 205 aaPredicted RBP15.68■□□□□ 0.1
CLN3-240ENST00000631023 OR52B4Q8NGK2 314 aa15.68■□□□□ 0.1
CLN3-240ENST00000631023 CACNG8Q8WXS5 425 aa15.68■□□□□ 0.1
CLN3-240ENST00000631023 C15orf62A8K5M9 175 aa15.67■□□□□ 0.1
CLN3-240ENST00000631023 SYNGR2O43760 224 aa15.67■□□□□ 0.1
CLN3-240ENST00000631023 CLN5O75503 358 aa15.67■□□□□ 0.1
CLN3-240ENST00000631023 YIF1AO95070 293 aa15.67■□□□□ 0.1
CLN3-240ENST00000631023 IFNA4P05014 189 aa15.67■□□□□ 0.1
CLN3-240ENST00000631023 C8orf88P0DMB2 117 aa15.67■□□□□ 0.1
CLN3-240ENST00000631023 EDN2P20800 178 aa15.67■□□□□ 0.1
CLN3-240ENST00000631023 RPP30P78346 268 aaKnown RBP15.67■□□□□ 0.1
CLN3-240ENST00000631023 TMEM170AQ8WVE7 144 aa15.67■□□□□ 0.1
CLN3-240ENST00000631023 SMAD5-AS1Q9Y6J3 95 aa15.67■□□□□ 0.1
CLN3-240ENST00000631023 TRAV30A0A087WSZ9 112 aa15.66■□□□□ 0.1
CLN3-240ENST00000631023 DEFA1P59665 94 aa15.66■□□□□ 0.1
CLN3-240ENST00000631023 DEFA3P59666 94 aa15.66■□□□□ 0.1
CLN3-240ENST00000631023 IZUMO1RA6ND01 250 aa15.66■□□□□ 0.1
CLN3-240ENST00000631023 RAB11AP62491 216 aa15.66■□□□□ 0.1
CLN3-240ENST00000631023 IFITM3Q01628 133 aa15.66■□□□□ 0.1
CLN3-240ENST00000631023 C11orf87Q6NUJ2 197 aa15.66■□□□□ 0.1
CLN3-240ENST00000631023 GTSCR1Q86UQ5 136 aa15.66■□□□□ 0.1
CLN3-240ENST00000631023 ZNF431Q8TF32 576 aaPredicted RBP15.66■□□□□ 0.1
CLN3-240ENST00000631023 MAGT1Q9H0U3 335 aa15.66■□□□□ 0.1
CLN3-240ENST00000631023 MPTX1A8MV57 137 aa15.65■□□□□ 0.1
CLN3-240ENST00000631023 IAPPP10997 89 aa15.65■□□□□ 0.1
CLN3-240ENST00000631023 PRSS54Q6PEW0 395 aa15.65■□□□□ 0.1
CLN3-240ENST00000631023 ZNF600Q6ZNG1 722 aa15.65■□□□□ 0.1
CLN3-240ENST00000631023 TMEM116Q8NCL8 245 aa15.65■□□□□ 0.1
CLN3-240ENST00000631023 OR10C1Q96KK4 312 aa15.65■□□□□ 0.1
CLN3-240ENST00000631023 GINS3Q9BRX5 216 aa15.65■□□□□ 0.1
CLN3-240ENST00000631023 MRPL36Q9P0J6 103 aaKnown RBP15.65■□□□□ 0.1
CLN3-240ENST00000631023 MLXQ9UH92 298 aa15.65■□□□□ 0.1
CLN3-240ENST00000631023 IGHV3OR16-8A0A075B7F1 116 aa15.64■□□□□ 0.09
CLN3-240ENST00000631023 WRBO00258 174 aa15.64■□□□□ 0.09
CLN3-240ENST00000631023 NKX2-1P43699 371 aaPredicted RBP15.64■□□□□ 0.09
CLN3-240ENST00000631023 ID3Q02535 119 aa15.64■□□□□ 0.09
CLN3-240ENST00000631023 BTNL8Q6UX41 500 aa15.64■□□□□ 0.09
CLN3-240ENST00000631023 SEC22CQ9BRL7 303 aa15.64■□□□□ 0.09
CLN3-240ENST00000631023 RND2P52198 227 aa15.63■□□□□ 0.09
CLN3-240ENST00000631023 CD69Q07108 199 aa15.63■□□□□ 0.09
CLN3-240ENST00000631023 GUCA2BQ16661 112 aa15.63■□□□□ 0.09
CLN3-240ENST00000631023 IAH1Q2TAA2 248 aaPredicted RBP15.63■□□□□ 0.09
CLN3-240ENST00000631023 RBPMS2Q6ZRY4 209 aaKnown RBP15.63■□□□□ 0.09
CLN3-240ENST00000631023 B9D2Q9BPU9 175 aa15.63■□□□□ 0.09
CLN3-240ENST00000631023 PAIP2BQ9ULR5 123 aaKnown RBP15.63■□□□□ 0.09
CLN3-240ENST00000631023 TRAV25A0A0B4J276 109 aa15.62■□□□□ 0.09
CLN3-240ENST00000631023 ZNF785A8K8V0 405 aa15.62■□□□□ 0.09
CLN3-240ENST00000631023 ZNF207O43670 478 aaKnown RBP15.62■□□□□ 0.09
CLN3-240ENST00000631023 GPX4P36969 197 aaPredicted RBP15.62■□□□□ 0.09
CLN3-240ENST00000631023 TOMM20LQ6UXN7 152 aa15.62■□□□□ 0.09
CLN3-240ENST00000631023 SLC16A13Q7RTY0 426 aa15.62■□□□□ 0.09
CLN3-240ENST00000631023 C12orf45Q8N5I9 185 aaPredicted RBP15.62■□□□□ 0.09
CLN3-240ENST00000631023 OR4D5Q8NGN0 318 aa15.62■□□□□ 0.09
CLN3-240ENST00000631023 OR1S2Q8NGQ3 325 aa15.62■□□□□ 0.09
CLN3-240ENST00000631023 PUS1Q9Y606 427 aaKnown RBP eCLIP15.62■□□□□ 0.09
CLN3-240ENST00000631023 TRAV14DV4A0A0A6YYC5 116 aa15.62■□□□□ 0.09
CLN3-240ENST00000631023 IL5P05113 134 aa15.62■□□□□ 0.09
CLN3-240ENST00000631023 LAMTOR1Q6IAA8 161 aa15.62■□□□□ 0.09
CLN3-240ENST00000631023 TMEM61Q8N0U2 210 aa15.62■□□□□ 0.09
CLN3-240ENST00000631023 NPIPB3Q92617 1050 aa15.62■□□□□ 0.09
CLN3-240ENST00000631023 GPN1Q9HCN4 374 aaPredicted RBP15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms