RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 KLF5Q13887 457 aaPredicted RBP4.18□□□□□ -1.74
VPS13D-213ENST00000613099 SAXO1Q8IYX7 474 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 FMC1Q96HJ9 113 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 EMC6Q9BV81 110 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 SCO2A0A1W2PP80 73 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 DEFB119Q8N690 84 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 FGF11Q92914 225 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 F5H697 171 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 TNFRSF1AP19438 455 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 GZMHP20718 246 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 DLX6P56179 175 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 ZNF645Q8N7E2 425 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 Q96M66 194 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 TMEM202A6NGA9 273 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 NDUFA3O95167 84 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 TEN1Q86WV5 123 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 SRSF12Q8WXF0 261 aaKnown RBP4.18□□□□□ -1.74
VPS13D-213ENST00000613099 DUX3Q96PT4 197 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 CDX4O14627 284 aaPredicted RBP4.18□□□□□ -1.74
VPS13D-213ENST00000613099 FAM159AQ6UWV7 190 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 VKORC1L1Q8N0U8 176 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 RFLNBQ8N5W9 214 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 RASL11BQ9BPW5 248 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 CRIM1Q9NZV1 1036 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 SDK2Q58EX2 2172 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 CACNG7P62955 275 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 SPINK9Q5DT21 86 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 USF3Q68DE3 2245 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 A0A1W2PRD5 423 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 A0A1W2PRF3 423 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 A0A1W2PRM7 423 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 NPC2P61916 151 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 VGLL4Q14135 290 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 TDRG1Q3Y452 100 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 METTL12A8MUP2 240 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 MOSP00540 346 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 IGLV3-27P01718 113 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 PVRP15151 417 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 SPSB3Q6PJ21 355 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 DTX1Q86Y01 620 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 NUP35Q8NFH5 326 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 SARAFQ96BY9 339 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 COQ2Q96H96 371 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 PRSS57Q6UWY2 283 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 C12orf49Q9H741 205 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 MS4A18H0YCH9 400 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 MS4A18Q3C1V0 323 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 VMA21Q3ZAQ7 101 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 LRRC75A-AS1Q8N1F1 130 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 IGHV4-34P06331 123 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 TMEFF1Q8IYR6 380 aa4.18□□□□□ -1.74
VPS13D-213ENST00000613099 MRPL20Q9BYC9 149 aaKnown RBP4.18□□□□□ -1.74
VPS13D-213ENST00000613099 HLA-DMBP28068 263 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 FCGR3BO75015 233 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 CXCL10P02778 98 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 CRYBA2P53672 197 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 LHX8Q68G74 356 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 C15orf53Q8NAA6 179 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 ELSPBP1Q96BH3 223 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 NABP2Q9BQ15 211 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 WFDC6Q9BQY6 131 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 C2CD3Q4AC94 2353 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 A0A1W2PQU0 124 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 CIARTQ8N365 385 aaPredicted RBP4.17□□□□□ -1.74
VPS13D-213ENST00000613099 MBNL2Q5VZF2 373 aaKnown RBP4.17□□□□□ -1.74
VPS13D-213ENST00000613099 GFRA4Q9GZZ7 299 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 H3BQ85 93 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 DXOO77932 396 aaKnown RBP4.17□□□□□ -1.74
VPS13D-213ENST00000613099 FAM214BQ7L5A3 538 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 TMEM230Q96A57 120 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 ZNF785A8K8V0 405 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 SRSF2Q01130 221 aaKnown RBP4.17□□□□□ -1.74
VPS13D-213ENST00000613099 DLL1O00548 723 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 PIGYQ3MUY2 71 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 BDP1A6H8Y1 2624 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 SRSF7Q16629 238 aaKnown RBP eCLIP4.17□□□□□ -1.74
VPS13D-213ENST00000613099 HES7Q9BYE0 225 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 ATP23Q9Y6H3 246 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 IGFBP3P17936 291 aaPredicted RBP4.17□□□□□ -1.74
VPS13D-213ENST00000613099 GNB1P62873 340 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 ZIC1Q15915 447 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 ZIC4Q8N9L1 334 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 WIPF2Q8TF74 440 aaPredicted RBP4.17□□□□□ -1.74
VPS13D-213ENST00000613099 PSG8Q9UQ74 426 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 WFDC2Q14508 124 aa4.17□□□□□ -1.74
VPS13D-213ENST00000613099 CELA2BP08218 269 aaPredicted RBP4.16□□□□□ -1.74
VPS13D-213ENST00000613099 SUPT4H1P63272 117 aaKnown RBP4.16□□□□□ -1.74
VPS13D-213ENST00000613099 Q6ZUT4 128 aa4.16□□□□□ -1.74
VPS13D-213ENST00000613099 RPL15P61313 204 aaKnown RBP4.16□□□□□ -1.74
VPS13D-213ENST00000613099 PRSS27Q9BQR3 290 aa4.16□□□□□ -1.74
VPS13D-213ENST00000613099 YRDCQ86U90 279 aaKnown RBP4.16□□□□□ -1.74
VPS13D-213ENST00000613099 KIR2DL4Q99706 377 aa4.16□□□□□ -1.74
VPS13D-213ENST00000613099 NAPSAO96009 420 aa4.16□□□□□ -1.74
VPS13D-213ENST00000613099 CDAP32320 146 aa4.16□□□□□ -1.74
VPS13D-213ENST00000613099 C2orf83Q53S99 150 aa4.16□□□□□ -1.74
VPS13D-213ENST00000613099 CEND1Q8N111 149 aa4.16□□□□□ -1.74
VPS13D-213ENST00000613099 RNF125Q96EQ8 232 aa4.16□□□□□ -1.74
VPS13D-213ENST00000613099 RNASE7Q9H1E1 156 aaKnown RBP4.16□□□□□ -1.74
VPS13D-213ENST00000613099 H7C1H1 209 aa4.16□□□□□ -1.74
VPS13D-213ENST00000613099 ORMDL2Q53FV1 153 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms