RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TBC1D24Q9ULP9 559 aa11.42□□□□□ -0.58
UPF1-202ENST00000594243 TRAV6A0A075B6T7 132 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 IGHV3-35A0A0C4DH35 117 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 SCGB2A1O75556 95 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 IFNA10P01566 189 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 IGHV3-48P01763 117 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 NPY1RP25929 384 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 ADMP35318 185 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 ETFRF1Q6IPR1 90 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 LCN12Q6JVE5 192 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 UNQ9165/PRO28630Q6UXU0 137 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 HAPLN4Q86UW8 402 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 DYNLRB2Q8TF09 96 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 MITD1Q8WV92 249 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 MARC2Q969Z3 335 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 NUDT15Q9NV35 164 aa11.41□□□□□ -0.58
UPF1-202ENST00000594243 TECRQ9NZ01 308 aaKnown RBP11.41□□□□□ -0.58
UPF1-202ENST00000594243 MRPL27Q9P0M9 148 aaKnown RBP11.41□□□□□ -0.58
UPF1-202ENST00000594243 ADAP1O75689 374 aa11.4□□□□□ -0.58
UPF1-202ENST00000594243 H2AFB2P0C5Z0 115 aa11.4□□□□□ -0.58
UPF1-202ENST00000594243 ADAMTSL5Q6ZMM2 481 aa11.4□□□□□ -0.58
UPF1-202ENST00000594243 OR4X1Q8NH49 305 aa11.4□□□□□ -0.58
UPF1-202ENST00000594243 TRAV30A0A087WSZ9 112 aa11.39□□□□□ -0.59
UPF1-202ENST00000594243 TMEM213A2RRL7 107 aa11.39□□□□□ -0.59
UPF1-202ENST00000594243 K7EMT4 169 aa11.39□□□□□ -0.59
UPF1-202ENST00000594243 TMEM50AO95807 157 aa11.39□□□□□ -0.59
UPF1-202ENST00000594243 C8orf88P0DMB2 117 aa11.39□□□□□ -0.59
UPF1-202ENST00000594243 SLC25A4P12235 298 aa11.39□□□□□ -0.59
UPF1-202ENST00000594243 RPP30P78346 268 aaKnown RBP11.39□□□□□ -0.59
UPF1-202ENST00000594243 MLANAQ16655 118 aa11.39□□□□□ -0.59
UPF1-202ENST00000594243 DEFB114Q30KQ6 69 aa11.39□□□□□ -0.59
UPF1-202ENST00000594243 TM4SF20Q53R12 229 aa11.39□□□□□ -0.59
UPF1-202ENST00000594243 UXS1Q8NBZ7 420 aa11.39□□□□□ -0.59
UPF1-202ENST00000594243 OR52B4Q8NGK2 314 aa11.39□□□□□ -0.59
UPF1-202ENST00000594243 ENKURQ8TC29 256 aa11.39□□□□□ -0.59
UPF1-202ENST00000594243 TMEM190Q8WZ59 177 aa11.39□□□□□ -0.59
UPF1-202ENST00000594243 CIB3Q96Q77 187 aaPredicted RBP11.39□□□□□ -0.59
UPF1-202ENST00000594243 FNDC4Q9H6D8 234 aaPredicted RBP11.39□□□□□ -0.59
UPF1-202ENST00000594243 DAZ1Q9NQZ3 744 aaKnown RBP11.39□□□□□ -0.59
UPF1-202ENST00000594243 LSM4Q9Y4Z0 139 aaKnown RBP11.39□□□□□ -0.59
UPF1-202ENST00000594243 C15orf62A8K5M9 175 aa11.38□□□□□ -0.59
UPF1-202ENST00000594243 SYNGR2O43760 224 aa11.38□□□□□ -0.59
UPF1-202ENST00000594243 CLN5O75503 358 aa11.38□□□□□ -0.59
UPF1-202ENST00000594243 DEFA1P59665 94 aa11.38□□□□□ -0.59
UPF1-202ENST00000594243 DEFA3P59666 94 aa11.38□□□□□ -0.59
UPF1-202ENST00000594243 RAB11AP62491 216 aa11.38□□□□□ -0.59
UPF1-202ENST00000594243 CD300EQ496F6 205 aaPredicted RBP11.38□□□□□ -0.59
UPF1-202ENST00000594243 ZNF431Q8TF32 576 aaPredicted RBP11.38□□□□□ -0.59
UPF1-202ENST00000594243 C20orf24Q9BUV8 137 aa11.38□□□□□ -0.59
UPF1-202ENST00000594243 SMAD5-AS1Q9Y6J3 95 aa11.38□□□□□ -0.59
UPF1-202ENST00000594243 MPTX1A8MV57 137 aa11.37□□□□□ -0.59
UPF1-202ENST00000594243 YIF1AO95070 293 aa11.37□□□□□ -0.59
UPF1-202ENST00000594243 IFNA4P05014 189 aa11.37□□□□□ -0.59
UPF1-202ENST00000594243 EDN2P20800 178 aa11.37□□□□□ -0.59
UPF1-202ENST00000594243 IFITM3Q01628 133 aa11.37□□□□□ -0.59
UPF1-202ENST00000594243 ID3Q02535 119 aa11.37□□□□□ -0.59
UPF1-202ENST00000594243 ZNF600Q6ZNG1 722 aa11.37□□□□□ -0.59
UPF1-202ENST00000594243 TMEM170AQ8WVE7 144 aa11.37□□□□□ -0.59
UPF1-202ENST00000594243 CACNG8Q8WXS5 425 aa11.37□□□□□ -0.59
UPF1-202ENST00000594243 WRBO00258 174 aa11.36□□□□□ -0.59
UPF1-202ENST00000594243 IAPPP10997 89 aa11.36□□□□□ -0.59
UPF1-202ENST00000594243 NKX2-1P43699 371 aaPredicted RBP11.36□□□□□ -0.59
UPF1-202ENST00000594243 CD69Q07108 199 aa11.36□□□□□ -0.59
UPF1-202ENST00000594243 C11orf87Q6NUJ2 197 aa11.36□□□□□ -0.59
UPF1-202ENST00000594243 GTSCR1Q86UQ5 136 aa11.36□□□□□ -0.59
UPF1-202ENST00000594243 C12orf45Q8N5I9 185 aaPredicted RBP11.36□□□□□ -0.59
UPF1-202ENST00000594243 TMEM116Q8NCL8 245 aa11.36□□□□□ -0.59
UPF1-202ENST00000594243 OR4D5Q8NGN0 318 aa11.36□□□□□ -0.59
UPF1-202ENST00000594243 OR10C1Q96KK4 312 aa11.36□□□□□ -0.59
UPF1-202ENST00000594243 MAGT1Q9H0U3 335 aa11.36□□□□□ -0.59
UPF1-202ENST00000594243 MLXQ9UH92 298 aa11.36□□□□□ -0.59
UPF1-202ENST00000594243 NOTCH3Q9UM47 2321 aa11.35□□□□□ -0.59
UPF1-202ENST00000594243 TRAV14DV4A0A0A6YYC5 116 aa11.35□□□□□ -0.59
UPF1-202ENST00000594243 IZUMO1RA6ND01 250 aa11.35□□□□□ -0.59
UPF1-202ENST00000594243 IL5P05113 134 aa11.35□□□□□ -0.59
UPF1-202ENST00000594243 GPX4P36969 197 aaPredicted RBP11.35□□□□□ -0.59
UPF1-202ENST00000594243 IAH1Q2TAA2 248 aaPredicted RBP11.35□□□□□ -0.59
UPF1-202ENST00000594243 PRSS54Q6PEW0 395 aa11.35□□□□□ -0.59
UPF1-202ENST00000594243 RBPMS2Q6ZRY4 209 aaKnown RBP11.35□□□□□ -0.59
UPF1-202ENST00000594243 SEC22CQ9BRL7 303 aa11.35□□□□□ -0.59
UPF1-202ENST00000594243 GINS3Q9BRX5 216 aa11.35□□□□□ -0.59
UPF1-202ENST00000594243 MRPL36Q9P0J6 103 aaKnown RBP11.35□□□□□ -0.59
UPF1-202ENST00000594243 IGHV3OR16-8A0A075B7F1 116 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 TRAV25A0A0B4J276 109 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 ZNF785A8K8V0 405 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 RND2P52198 227 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 GUCA2BQ16661 112 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 LAMTOR1Q6IAA8 161 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 BTNL8Q6UX41 500 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 TOMM20LQ6UXN7 152 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 NRARPQ7Z6K4 114 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 OR1S2Q8NGQ3 325 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 B9D2Q9BPU9 175 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 GPN1Q9HCN4 374 aaPredicted RBP11.34□□□□□ -0.59
UPF1-202ENST00000594243 GSKIPQ9P0R6 139 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 SMPXQ9UHP9 88 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 PAIP2BQ9ULR5 123 aaKnown RBP11.34□□□□□ -0.59
UPF1-202ENST00000594243 PUS1Q9Y606 427 aaKnown RBP eCLIP11.34□□□□□ -0.59
UPF1-202ENST00000594243 DNAH3Q8TD57 4116 aa11.34□□□□□ -0.59
UPF1-202ENST00000594243 IGHV7-4-1A0A0J9YVY3 117 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms