RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 A0A0G2JLM5 398 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 CLPSL1A2RUU4 121 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 NDUFB8O95169 186 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 RAB9AP51151 201 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 TPPP2P59282 170 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 CLINT1Q14677 625 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 ZNF329Q86UD4 541 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 KLHDC1Q8N7A1 406 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 RNF152Q8N8N0 203 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 MS4A10Q96PG2 267 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 ATP6V0BQ99437 205 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 NPVFQ9HCQ7 196 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 BORCS7-ASMTA0A0B4J1R7 106 aa8.37□□□□□ -1.07
SS18-213ENST00000579640 JTBO76095 146 aa8.37□□□□□ -1.07
SS18-213ENST00000579640 IFNA5P01569 189 aa8.37□□□□□ -1.07
SS18-213ENST00000579640 FCGR2BP31994 310 aaPredicted RBP8.37□□□□□ -1.07
SS18-213ENST00000579640 EIF5AP63241 154 aaKnown RBP8.37□□□□□ -1.07
SS18-213ENST00000579640 ATP5G2Q06055 141 aa8.37□□□□□ -1.07
SS18-213ENST00000579640 OPCMLQ14982 345 aa8.37□□□□□ -1.07
SS18-213ENST00000579640 C15orf32Q32M92 178 aa8.37□□□□□ -1.07
SS18-213ENST00000579640 FAM209BQ5JX69 171 aa8.37□□□□□ -1.07
SS18-213ENST00000579640 TMEM116Q8NCL8 245 aa8.37□□□□□ -1.07
SS18-213ENST00000579640 OR4X2Q8NGF9 303 aa8.37□□□□□ -1.07
SS18-213ENST00000579640 SCARB1Q8WTV0 552 aa8.37□□□□□ -1.07
SS18-213ENST00000579640 EEF1AKMT3Q96AZ1 226 aa8.37□□□□□ -1.07
SS18-213ENST00000579640 TXN2Q99757 166 aa8.37□□□□□ -1.07
SS18-213ENST00000579640 PARD6GQ9BYG4 376 aaPredicted RBP8.37□□□□□ -1.07
SS18-213ENST00000579640 GAR1Q9NY12 217 aaKnown RBP8.37□□□□□ -1.07
SS18-213ENST00000579640 NIPBLQ6KC79 2804 aaeCLIP8.37□□□□□ -1.07
SS18-213ENST00000579640 TRBV7-1A0A0A6YYK4 115 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 SMCO3A2RU48 225 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 SCGB2A1O75556 95 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 NPBWR1P48145 328 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 MFAP4P55083 255 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 AKR1C1Q04828 323 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 GAMTQ14353 236 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 ACSM6Q6P461 480 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 TMEM144Q7Z5S9 345 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 OR5AU1Q8NGC0 362 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 OR4X1Q8NH49 305 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 WIPF2Q8TF74 440 aaPredicted RBP8.36□□□□□ -1.07
SS18-213ENST00000579640 TAF15Q92804 592 aaKnown RBP eCLIP8.36□□□□□ -1.07
SS18-213ENST00000579640 WFDC1Q9HC57 220 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 C21orf62Q9NYP8 219 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 RNF114Q9Y508 228 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 UBE2L5PA0A1B0GUS4 154 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 MPDU1O75352 247 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 SRSF2Q01130 221 aaKnown RBP8.36□□□□□ -1.07
SS18-213ENST00000579640 FOXL1Q12952 345 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 MLANAQ16655 118 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 TEPPQ6URK8 271 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 SLC51BQ86UW2 128 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 UBAC2Q8NBM4 344 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 SCGB1C1Q8TD33 95 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 MYOZ3Q8TDC0 251 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 ACY3Q96HD9 319 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 ZNF471Q9BX82 626 aaPredicted RBP8.36□□□□□ -1.07
SS18-213ENST00000579640 KLK15Q9H2R5 256 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 CYTL1Q9NRR1 136 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 WDR83OSQ9Y284 106 aa8.36□□□□□ -1.07
SS18-213ENST00000579640 TRAV30A0A087WSZ9 112 aa8.35□□□□□ -1.07
SS18-213ENST00000579640 IGHV3-21A0A0B4J1V1 117 aa8.35□□□□□ -1.07
SS18-213ENST00000579640 MFSD2BA6NFX1 497 aa8.35□□□□□ -1.07
SS18-213ENST00000579640 CLN5O75503 358 aa8.35□□□□□ -1.07
SS18-213ENST00000579640 MDKP21741 143 aaPredicted RBP8.35□□□□□ -1.07
SS18-213ENST00000579640 RND2P52198 227 aa8.35□□□□□ -1.07
SS18-213ENST00000579640 PROK1P58294 105 aa8.35□□□□□ -1.07
SS18-213ENST00000579640 RAB31Q13636 194 aa8.35□□□□□ -1.07
SS18-213ENST00000579640 RPL7L1Q6DKI1 246 aaKnown RBP8.35□□□□□ -1.07
SS18-213ENST00000579640 C10orf99Q6UWK7 81 aa8.35□□□□□ -1.07
SS18-213ENST00000579640 TREML4Q6UXN2 200 aa8.35□□□□□ -1.07
SS18-213ENST00000579640 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.35□□□□□ -1.07
SS18-213ENST00000579640 THAP8Q8NA92 274 aa8.35□□□□□ -1.07
SS18-213ENST00000579640 ZNF502Q8TBZ5 544 aa8.35□□□□□ -1.07
SS18-213ENST00000579640 WFDC12Q8WWY7 111 aa8.35□□□□□ -1.07
SS18-213ENST00000579640 NPIPB3Q92617 1050 aa8.35□□□□□ -1.07
SS18-213ENST00000579640 WDR61Q9GZS3 305 aaKnown RBP8.35□□□□□ -1.07
SS18-213ENST00000579640 CUBNO60494 3623 aa8.34□□□□□ -1.07
SS18-213ENST00000579640 IGHV3-48P01763 117 aa8.34□□□□□ -1.07
SS18-213ENST00000579640 TPT1P13693 172 aaKnown RBP8.34□□□□□ -1.07
SS18-213ENST00000579640 DEFA5Q01523 94 aa8.34□□□□□ -1.07
SS18-213ENST00000579640 Q56UQ5 140 aa8.34□□□□□ -1.07
SS18-213ENST00000579640 BTNL8Q6UX41 500 aa8.34□□□□□ -1.07
SS18-213ENST00000579640 ZNF491Q8N8L2 437 aa8.34□□□□□ -1.07
SS18-213ENST00000579640 STOML3Q8TAV4 291 aa8.34□□□□□ -1.07
SS18-213ENST00000579640 UBE2E2Q96LR5 201 aa8.34□□□□□ -1.07
SS18-213ENST00000579640 MRPL36Q9P0J6 103 aaKnown RBP8.34□□□□□ -1.07
SS18-213ENST00000579640 LSM4Q9Y4Z0 139 aaKnown RBP8.34□□□□□ -1.07
SS18-213ENST00000579640 GNG7O60262 68 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 RPLP1P05386 114 aaKnown RBP8.33□□□□□ -1.08
SS18-213ENST00000579640 FGF7P21781 194 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 KIAA0141Q14154 515 aaPredicted RBP8.33□□□□□ -1.08
SS18-213ENST00000579640 ZNF343Q6P1L6 599 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 TRGV9Q99603 122 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 ARV1Q9H2C2 271 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 KCNIP2Q9NS61 270 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 BOLA1Q9Y3E2 137 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.33□□□□□ -1.08
SS18-213ENST00000579640 ZFP92A6NM28 416 aa8.33□□□□□ -1.08
SS18-213ENST00000579640 C17orf112F2Z3M2 114 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms