RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ZNF883P0CG24 379 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 CT45A6P0DMU7 189 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 CT45A5P0DMU8 189 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 CT45A7P0DMV0 189 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 WT1P19544 449 aaPredicted RBP4.4□□□□□ -1.7
LIMA1-212ENST00000552491 NTF3P20783 257 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 ATP5IP56385 69 aaPredicted RBP4.4□□□□□ -1.7
LIMA1-212ENST00000552491 TAS2R45P59539 299 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 POU2AF1Q16633 256 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 C21orf62-AS1Q17RA5 79 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 DHRS13Q6UX07 377 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 SPATA12Q7Z6I5 190 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 SPACA3Q8IXA5 215 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 KIR3DL3Q8N743 410 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 KLHDC1Q8N7A1 406 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 TMEM178AQ8NBL3 297 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 ZNF439Q8NDP4 499 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 C18orf32Q8TCD1 76 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 SLC25A33Q9BSK2 321 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 SLC25A2Q9BXI2 301 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 NCOR1P1Q9H4R4 102 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 PLEKHA3Q9HB20 300 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 DNAJC4Q9NNZ3 241 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 RAB9BQ9NP90 201 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 SERTAD4Q9NUC0 356 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 PRNDQ9UKY0 176 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 ZNF257Q9Y2Q1 563 aa4.4□□□□□ -1.7
LIMA1-212ENST00000552491 BSNQ9UPA5 3926 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 IZUMO1RA6ND01 250 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 UPK2O00526 184 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 LHBP01229 141 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 IGHV3-48P01763 117 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 APCSP02743 223 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 PYYP10082 97 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 RNASE2P10153 161 aaKnown RBP4.4□□□□□ -1.71
LIMA1-212ENST00000552491 CD59P13987 128 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 GPR6P46095 362 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-212ENST00000552491 PRCDQ00LT1 54 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 TNXAQ16473 311 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 EBLN2Q6P2I7 272 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 RASL11AQ6T310 242 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 ZNF841Q6ZN19 808 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 Q6ZN92 141 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 OR2T6Q8NHC8 308 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 BORCS7Q96B45 105 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 MBD6Q96DN6 1003 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 ADTRPQ96IZ2 230 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 TXN2Q99757 166 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 COMMD5Q9GZQ3 224 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 ZNF331Q9NQX6 463 aaPredicted RBP4.4□□□□□ -1.71
LIMA1-212ENST00000552491 SLC35D1Q9NTN3 355 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 MRPL27Q9P0M9 148 aaKnown RBP4.4□□□□□ -1.71
LIMA1-212ENST00000552491 LAMTOR2Q9Y2Q5 125 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 KALRNO60229 2985 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 CSMD1Q96PZ7 3565 aa4.4□□□□□ -1.71
LIMA1-212ENST00000552491 KBTBD11-OT1A0A1B0GTJ5 212 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 CORTO00230 105 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 SPRY3O43610 288 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 IGHG3P01860 377 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 C8orf88P0DMB2 117 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 USF1P22415 310 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 SELENOVP59797 346 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 C2orf83Q53S99 150 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 VHLLQ6RSH7 139 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 LHFPL4Q7Z7J7 247 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 DEFB108BQ8NET1 73 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 WIPF2Q8TF74 440 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 ITLN1Q8WWA0 313 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 RND1Q92730 232 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 SSBP4Q9BWG4 385 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 ZNF71Q9NQZ8 489 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 ZNF355PQ9NSJ1 428 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 MGAQ8IWI9 3026 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 CEP250Q9BV73 2442 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 MAP1BP46821 2468 aaKnown RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 CCL25O15444 150 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 SAA1P0DJI8 122 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 CD24P25063 80 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 HNRNPA3P51991 378 aaKnown RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 RPL8P62917 257 aaKnown RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 PMCHL1Q16048 86 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 RUSC1-AS1Q66K80 236 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 UNQ5815/PRO19632Q6UWF5 114 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 PATE2Q6UY27 113 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 FAM231DQ6ZW35 169 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 FAM216BQ8N7L0 139 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 NUP35Q8NFH5 326 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 URB1-AS1Q96HZ7 61 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 SGK494Q96LW2 274 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 MRPL32Q9BYC8 188 aaKnown RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 MRPL36Q9P0J6 103 aaKnown RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 DKK4Q9UBT3 224 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 SLC25A15Q9Y619 301 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 ADGRG4Q8IZF6 3080 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 SH2D7A6NKC9 451 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 CDX4O14627 284 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-212ENST00000552491 NKX2-8O15522 239 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 FSTL3O95633 263 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 PLAUP00749 431 aa4.39□□□□□ -1.71
LIMA1-212ENST00000552491 TSPOP30536 169 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms