RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 IFI27L2Q9H2X8 130 aa3.36□□□□□ -1.87
CD44-226ENST00000527889 PLEKHF2Q9H8W4 249 aa3.36□□□□□ -1.87
CD44-226ENST00000527889 ZNRD1Q9P1U0 126 aa3.36□□□□□ -1.87
CD44-226ENST00000527889 KAAG1Q9UBP8 84 aa3.36□□□□□ -1.87
CD44-226ENST00000527889 CLN8Q9UBY8 286 aa3.36□□□□□ -1.87
CD44-226ENST00000527889 SHPKQ9UHJ6 478 aa3.36□□□□□ -1.87
CD44-226ENST00000527889 RPUSD1Q9UJJ7 312 aaKnown RBP3.36□□□□□ -1.87
CD44-226ENST00000527889 JPT1Q9UK76 154 aa3.36□□□□□ -1.87
CD44-226ENST00000527889 HSPB11Q9Y547 144 aa3.36□□□□□ -1.87
CD44-226ENST00000527889 LINC00312Q9Y6C7 94 aa3.36□□□□□ -1.87
CD44-226ENST00000527889 V9GYY9 64 aa3.36□□□□□ -1.87
CD44-226ENST00000527889 SORL1Q92673 2214 aa3.36□□□□□ -1.87
CD44-226ENST00000527889 SAA2-SAA4A0A096LPE2 208 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 A0A0G2JRQ6 117 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 C17orf98A8MV24 154 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 M0R1X1 148 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 OVOL3O00110 214 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 DLEU1O43261 78 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 TGOLN2O43493 480 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 YPEL1O60688 119 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 PROP1O75360 226 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 MPC2O95563 127 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 IGKV1-39P01597 117 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 IGKV1D-39P04432 117 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 WNT2P09544 360 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 OR10J4P0C629 311 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 SAA2P0DJI9 122 aaPredicted RBP3.35□□□□□ -1.87
CD44-226ENST00000527889 HLA-GP17693 338 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 CXCL2P19875 107 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 C4BPBP20851 252 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 F2RP25116 425 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 CDX1P47902 265 aaPredicted RBP3.35□□□□□ -1.87
CD44-226ENST00000527889 TMEM33P57088 247 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 PROK1P58294 105 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 PLP1P60201 277 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 KRTAP10-9P60411 292 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 S100A10P60903 97 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 SRPXP78539 464 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 MRPS11P82912 194 aaKnown RBP3.35□□□□□ -1.87
CD44-226ENST00000527889 MEF2CQ06413 473 aaPredicted RBP3.35□□□□□ -1.87
CD44-226ENST00000527889 SRSF4Q08170 494 aaKnown RBP3.35□□□□□ -1.87
CD44-226ENST00000527889 ZNF816Q0VGE8 651 aaPredicted RBP3.35□□□□□ -1.87
CD44-226ENST00000527889 EIF4EBP1Q13541 118 aaPredicted RBP3.35□□□□□ -1.87
CD44-226ENST00000527889 IZUMO4Q1ZYL8 232 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 IAH1Q2TAA2 248 aaPredicted RBP3.35□□□□□ -1.87
CD44-226ENST00000527889 TMEM155Q4W5P6 130 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 CT45A1Q5HYN5 189 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 BTNL8Q6UX41 500 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 HEPN1Q6WQI6 88 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 SIGLEC15Q6ZMC9 328 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 ZNF841Q6ZN19 808 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 H2BFWTQ7Z2G1 175 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 ZNF695Q8IW36 515 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 LGI3Q8N145 548 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 LYG1Q8N1E2 194 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 STPG2Q8N412 459 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 C9orf62Q8N4C0 152 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 SLC35G3Q8N808 338 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 LRTM2Q8N967 370 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 NEXN-AS1Q8NBZ9 246 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 ZNF439Q8NDP4 499 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 CT45A3Q8NHU0 189 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 THAP6Q8TBB0 222 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 PPP1R1CQ8WVI7 109 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 TCTEX1D2Q8WW35 142 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 SSMEM1Q8WWF3 244 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 C18orf12Q96KH6 178 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 HYLS1Q96M11 299 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 ZNF714Q96N38 554 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 YPEL2Q96QA6 119 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 AGMATQ9BSE5 352 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 MCRIP2Q9BUT9 160 aaKnown RBP3.35□□□□□ -1.87
CD44-226ENST00000527889 NMES1Q9C002 83 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 BPESC1Q9GZL8 116 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 LINC00574Q9H8X3 128 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 PATZ1Q9HBE1 687 aaKnown RBP3.35□□□□□ -1.87
CD44-226ENST00000527889 COMMD9Q9P000 198 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 MIOXQ9UGB7 285 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 PAM16Q9Y3D7 125 aa3.35□□□□□ -1.87
CD44-226ENST00000527889 LSM5Q9Y4Y9 91 aaKnown RBP3.35□□□□□ -1.87
CD44-226ENST00000527889 MEGF8Q7Z7M0 2845 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.34□□□□□ -1.87
CD44-226ENST00000527889 PPIAL4CA0A0B4J2A2 164 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 RNF212BA8MTL3 300 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 CHEK1O14757 476 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 S1PR2O95136 353 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 FSTL3O95633 263 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 CDS2O95674 445 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 MT-CO2P00403 227 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 IGKV1-5P01602 117 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 IGHV2-5P01817 119 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 SLPIP03973 132 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 CD5P06127 495 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 PPIAL4GP0DN37 164 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 IGHV1-8P0DP01 117 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 COX7A1P24310 79 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 DUTP33316 252 aaKnown RBP3.34□□□□□ -1.87
CD44-226ENST00000527889 LPAR6P43657 344 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 PDLIM4P50479 330 aa3.34□□□□□ -1.87
CD44-226ENST00000527889 RAB7AP51149 207 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms