RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 IL36BQ9NZH7 164 aa13.49□□□□□ -0.25
PCDHA3-201ENST00000522353 ZNF257Q9Y2Q1 563 aa13.49□□□□□ -0.25
PCDHA3-201ENST00000522353 TAS2R60P59551 318 aa13.49□□□□□ -0.25
PCDHA3-201ENST00000522353 ZNF319Q9P2F9 582 aa13.49□□□□□ -0.25
PCDHA3-201ENST00000522353 IGHV1-8P0DP01 117 aa13.49□□□□□ -0.25
PCDHA3-201ENST00000522353 MST1P26927 711 aa13.49□□□□□ -0.25
PCDHA3-201ENST00000522353 IGKV1D-13A0A0B4J2D9 117 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 OR11H12B2RN74 326 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 M0R1W7 72 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 IGKV1-13P0DP09 117 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 ZNF525Q8N782 197 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 OR11H1Q8NG94 326 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 OR11H2Q8NH07 326 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 NABP1Q96AH0 204 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 FABP5P3A8MUU1 101 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 CD5P06127 495 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 TMEM136Q6ZRR5 245 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 PRELID3AQ96N28 172 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 NDUFS8O00217 210 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 FER1L6-AS1Q8NA97 138 aa13.48□□□□□ -0.25
PCDHA3-201ENST00000522353 MRAP2Q96G30 205 aa13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 GRIFINA4D1Z8 144 aa13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 CBLN1P23435 193 aa13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 GATA2P23769 480 aaPredicted RBP13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 SRSF6Q13247 344 aaKnown RBP13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 MIR17HGQ75NE6 70 aa13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 PI4KAP42356 2102 aa13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 H3BRM9 83 aa13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 EFNB1P98172 346 aa13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 SP5Q6BEB4 398 aaPredicted RBP13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 LINC00518Q8N0U6 118 aa13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 ZNF414Q96IQ9 312 aa13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 TRAV9-1A0A075B6T8 112 aa13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 H3BUX3 64 aa13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 CD7P09564 240 aa13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 FAM169BQ8N8A8 192 aa13.47□□□□□ -0.25
PCDHA3-201ENST00000522353 ATP5LO75964 103 aa13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 TFF1P04155 84 aa13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 SRD5A1P18405 259 aa13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 BIVMQ86UB2 503 aa13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 LINC01356Q8N9X3 169 aa13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 RPP21Q9H633 154 aaKnown RBP13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 CARHSP1Q9Y2V2 147 aaKnown RBP13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 KIF26BQ2KJY2 2108 aa13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 TRAV21A0A0B4J279 112 aa13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 SAP30O75446 220 aa13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 SRP19P09132 144 aaKnown RBP13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 OTX1P32242 354 aaPredicted RBP13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 TPTE2P1Q5T6R2 138 aa13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 OR13C6PQ8NH95 151 aa13.46□□□□□ -0.25
PCDHA3-201ENST00000522353 TMEM170BQ5T4T1 132 aa13.46□□□□□ -0.26
PCDHA3-201ENST00000522353 TMEM200BQ69YZ2 307 aa13.46□□□□□ -0.26
PCDHA3-201ENST00000522353 CADP27708 2225 aa13.46□□□□□ -0.26
PCDHA3-201ENST00000522353 ZNF585BQ52M93 769 aa13.46□□□□□ -0.26
PCDHA3-201ENST00000522353 GLRX5Q86SX6 157 aa13.46□□□□□ -0.26
PCDHA3-201ENST00000522353 DOCK4Q8N1I0 1966 aa13.46□□□□□ -0.26
PCDHA3-201ENST00000522353 CREBBPQ92793 2442 aa13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 CHD5Q8TDI0 1954 aa13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 SRSF7Q16629 238 aaKnown RBP eCLIP13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 DTX2Q86UW9 622 aa13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 FOXA3P55318 350 aaPredicted RBP13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 PAQR4Q8N4S7 273 aaPredicted RBP13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 C18orf12Q96KH6 178 aa13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 PKDREJQ9NTG1 2253 aa13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 SCO2A0A1W2PP80 73 aa13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 TCF21O43680 179 aa13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 PSMG4Q5JS54 123 aa13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 ZNF324BQ6AW86 544 aaPredicted RBP13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 CRIM1Q9NZV1 1036 aa13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 LINC00527Q9UJ94 153 aa13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 GREB1Q4ZG55 1949 aa13.45□□□□□ -0.26
PCDHA3-201ENST00000522353 OVOL1O14753 267 aa13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 RNF114Q9Y508 228 aa13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 TRGV11A0A075B6L2 103 aa13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 RNF222A6NCQ9 220 aa13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 J3QKU1 62 aa13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 TMEM183AQ8IXX5 376 aa13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 RNASE1P07998 156 aaKnown RBP13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 CFAP161Q6P656 301 aa13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 OR5AN1Q8NGI8 311 aa13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 TBL2Q9Y4P3 447 aaKnown RBP13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 TRGV4A0A0C4DH28 118 aa13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 GAS1P54826 345 aa13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 FAM71F2Q6NXP2 309 aa13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 SPSB3Q6PJ21 355 aa13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 MED12Q93074 2177 aa13.44□□□□□ -0.26
PCDHA3-201ENST00000522353 IGHV1-3A0A0C4DH29 117 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 LOC105371267A0A1B0GV96 52 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 RAMP3O60896 148 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 DDTP30046 118 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 TMEM155Q4W5P6 130 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 TMEM219Q86XT9 240 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 SELLP14151 372 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 GATA3P23771 443 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 ATP5G3P48201 142 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 ZNF474Q6S9Z5 364 aaPredicted RBP13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 SCGB1A1P11684 91 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 MUC21Q5SSG8 566 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 C3orf56Q8N813 242 aa13.43□□□□□ -0.26
PCDHA3-201ENST00000522353 DNAL4O96015 105 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms