RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ZNF439Q8NDP4 499 aa2.98□□□□□ -1.93
NUP54-215ENST00000514313 WFDC11Q8NEX6 87 aa2.98□□□□□ -1.93
NUP54-215ENST00000514313 CKLFQ9UBR5 152 aa2.98□□□□□ -1.93
NUP54-215ENST00000514313 LHFPL6Q9Y693 200 aa2.98□□□□□ -1.93
NUP54-215ENST00000514313 TRAPPC13A5PLN9 417 aa2.97□□□□□ -1.93
NUP54-215ENST00000514313 SDCBPO00560 298 aaPredicted RBP2.97□□□□□ -1.93
NUP54-215ENST00000514313 SULT1B1O43704 296 aa2.97□□□□□ -1.93
NUP54-215ENST00000514313 SHBGP04278 402 aa2.97□□□□□ -1.93
NUP54-215ENST00000514313 GPX1P07203 203 aa2.97□□□□□ -1.93
NUP54-215ENST00000514313 HTR1AP08908 422 aa2.97□□□□□ -1.93
NUP54-215ENST00000514313 CRYGAP11844 174 aa2.97□□□□□ -1.93
NUP54-215ENST00000514313 SRIP30626 198 aa2.97□□□□□ -1.93
NUP54-215ENST00000514313 COA5Q86WW8 74 aa2.97□□□□□ -1.93
NUP54-215ENST00000514313 CST9LQ9H4G1 147 aa2.97□□□□□ -1.93
NUP54-215ENST00000514313 OSTCQ9NRP0 149 aa2.97□□□□□ -1.93
NUP54-215ENST00000514313 TOPBP1Q92547 1522 aa2.97□□□□□ -1.93
NUP54-215ENST00000514313 A0A0D9SG52 128 aa2.96□□□□□ -1.94
NUP54-215ENST00000514313 DPPA3Q6W0C5 159 aa2.96□□□□□ -1.94
NUP54-215ENST00000514313 Q6ZQT0 140 aa2.96□□□□□ -1.94
NUP54-215ENST00000514313 AAED1Q7RTV5 226 aa2.96□□□□□ -1.94
NUP54-215ENST00000514313 TRAPPC6BQ86SZ2 158 aa2.96□□□□□ -1.94
NUP54-215ENST00000514313 SIGLECL1Q8N7X8 197 aa2.96□□□□□ -1.94
NUP54-215ENST00000514313 OR5A1Q8NGJ0 315 aa2.96□□□□□ -1.94
NUP54-215ENST00000514313 BAHCC1Q9P281 2608 aa2.96□□□□□ -1.94
NUP54-215ENST00000514313 DISP1Q96F81 1524 aa2.95□□□□□ -1.94
NUP54-215ENST00000514313 ZNF106Q9H2Y7 1883 aaKnown RBP2.95□□□□□ -1.94
NUP54-215ENST00000514313 TRAV4A0A0B4J268 109 aa2.95□□□□□ -1.94
NUP54-215ENST00000514313 HMGB3O15347 200 aaKnown RBP2.95□□□□□ -1.94
NUP54-215ENST00000514313 NNATQ16517 81 aa2.95□□□□□ -1.94
NUP54-215ENST00000514313 CAMSAP1Q5T5Y3 1602 aa2.94□□□□□ -1.94
NUP54-215ENST00000514313 C1orf196B1AJZ1 125 aa2.94□□□□□ -1.94
NUP54-215ENST00000514313 TMEM238C9JI98 176 aa2.94□□□□□ -1.94
NUP54-215ENST00000514313 C1QBP02746 253 aa2.94□□□□□ -1.94
NUP54-215ENST00000514313 ATP5G3P48201 142 aa2.94□□□□□ -1.94
NUP54-215ENST00000514313 KRR1Q13601 381 aaKnown RBP2.94□□□□□ -1.94
NUP54-215ENST00000514313 Q1T7F1 81 aa2.94□□□□□ -1.94
NUP54-215ENST00000514313 KHDC3LQ587J8 217 aa2.94□□□□□ -1.94
NUP54-215ENST00000514313 WFDC5Q8TCV5 224 aa2.94□□□□□ -1.94
NUP54-215ENST00000514313 GPR146Q96CH1 333 aa2.94□□□□□ -1.94
NUP54-215ENST00000514313 MYH11P35749 1972 aa2.94□□□□□ -1.94
NUP54-215ENST00000514313 TONSLQ96HA7 1378 aa2.93□□□□□ -1.94
NUP54-215ENST00000514313 CTSDP07339 412 aaPredicted RBP2.93□□□□□ -1.94
NUP54-215ENST00000514313 UBBP0CG47 229 aa2.93□□□□□ -1.94
NUP54-215ENST00000514313 G0S2P27469 103 aa2.93□□□□□ -1.94
NUP54-215ENST00000514313 YPEL3P61236 119 aaPredicted RBP2.93□□□□□ -1.94
NUP54-215ENST00000514313 RPL19P84098 196 aaKnown RBP2.93□□□□□ -1.94
NUP54-215ENST00000514313 OR8D4Q8NGM9 314 aa2.93□□□□□ -1.94
NUP54-215ENST00000514313 RNF122Q9H9V4 155 aa2.93□□□□□ -1.94
NUP54-215ENST00000514313 UTP11Q9Y3A2 253 aaKnown RBP2.93□□□□□ -1.94
NUP54-215ENST00000514313 CUL9Q8IWT3 2517 aa2.93□□□□□ -1.94
NUP54-215ENST00000514313 TCL1BO95988 128 aa2.92□□□□□ -1.94
NUP54-215ENST00000514313 GPX2P18283 190 aa2.92□□□□□ -1.94
NUP54-215ENST00000514313 GNG10P50151 68 aa2.92□□□□□ -1.94
NUP54-215ENST00000514313 PIGPP57054 158 aa2.92□□□□□ -1.94
NUP54-215ENST00000514313 OR4E2Q8NGC2 313 aa2.92□□□□□ -1.94
NUP54-215ENST00000514313 ADAT3Q96EY9 351 aaPredicted RBP2.92□□□□□ -1.94
NUP54-215ENST00000514313 RGS12O14924 1447 aa2.92□□□□□ -1.94
NUP54-215ENST00000514313 FN1P02751 2386 aaKnown RBP2.92□□□□□ -1.94
NUP54-215ENST00000514313 DOCK10Q96BY6 2186 aa2.91□□□□□ -1.94
NUP54-215ENST00000514313 EIF3AQ14152 1382 aaKnown RBP2.91□□□□□ -1.94
NUP54-215ENST00000514313 IGKV1D-42A0A075B6H8 117 aa2.91□□□□□ -1.94
NUP54-215ENST00000514313 TRBV19A0A075B6N1 114 aa2.91□□□□□ -1.94
NUP54-215ENST00000514313 A0A087X0T9 212 aa2.91□□□□□ -1.94
NUP54-215ENST00000514313 C19orf84I3L1E1 186 aa2.91□□□□□ -1.94
NUP54-215ENST00000514313 CRPP02741 224 aa2.91□□□□□ -1.94
NUP54-215ENST00000514313 FKBP2P26885 142 aaKnown RBP2.91□□□□□ -1.94
NUP54-215ENST00000514313 TMED4Q7Z7H5 227 aa2.91□□□□□ -1.94
NUP54-215ENST00000514313 MBD3L1Q8WWY6 194 aa2.91□□□□□ -1.94
NUP54-215ENST00000514313 Q96M85 177 aa2.91□□□□□ -1.94
NUP54-215ENST00000514313 YIPF3Q9GZM5 350 aa2.91□□□□□ -1.94
NUP54-215ENST00000514313 PLXND1Q9Y4D7 1925 aa2.91□□□□□ -1.94
NUP54-215ENST00000514313 SMARCA4P51532 1647 aa2.9□□□□□ -1.94
NUP54-215ENST00000514313 MEIKINA0A087WXM9 373 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 J3QKU1 62 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 J3QRK9 145 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 CYB5BO43169 146 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 OR4E1P0C645 316 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 ZNF705BP0CI00 300 aaPredicted RBP2.9□□□□□ -1.95
NUP54-215ENST00000514313 SPI1P17947 270 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 AKR1C3P42330 323 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 KRTAP12-4P60329 112 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 ELOBQ15370 118 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 RHEBQ15382 184 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 LYRM7Q5U5X0 104 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 DEFB128Q7Z7B8 93 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 LYG2Q86SG7 212 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 PRRT1Q99946 306 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 PYCARDQ9ULZ3 195 aa2.9□□□□□ -1.95
NUP54-215ENST00000514313 IGKV1-9A0A0C4DH69 117 aa2.89□□□□□ -1.95
NUP54-215ENST00000514313 ATG12O94817 140 aa2.89□□□□□ -1.95
NUP54-215ENST00000514313 COX6A1P12074 109 aa2.89□□□□□ -1.95
NUP54-215ENST00000514313 COL5A3P25940 1745 aaPredicted RBP2.89□□□□□ -1.95
NUP54-215ENST00000514313 RHOBP62745 196 aa2.89□□□□□ -1.95
NUP54-215ENST00000514313 FAM172AQ8WUF8 416 aa2.89□□□□□ -1.95
NUP54-215ENST00000514313 TMEM133Q9H2Q1 129 aa2.89□□□□□ -1.95
NUP54-215ENST00000514313 GID8Q9NWU2 228 aa2.89□□□□□ -1.95
NUP54-215ENST00000514313 TRGV2A0A075B6R0 118 aa2.88□□□□□ -1.95
NUP54-215ENST00000514313 E5RI56 91 aa2.88□□□□□ -1.95
NUP54-215ENST00000514313 NCALDP61601 193 aa2.88□□□□□ -1.95
NUP54-215ENST00000514313 ZNF846Q147U1 533 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 172.3 ms