RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 F8W735 103 aaPredicted RBP22.8■■□□□ 1.24
LIMCH1-211ENST00000509638 LINC01619G3V211 115 aa22.8■■□□□ 1.24
LIMCH1-211ENST00000509638 MYCNOSP40205 109 aa22.8■■□□□ 1.24
LIMCH1-211ENST00000509638 Q56UQ5 140 aa22.8■■□□□ 1.24
LIMCH1-211ENST00000509638 OR2T8A6NH00 312 aa22.8■■□□□ 1.24
LIMCH1-211ENST00000509638 BMPR1BO00238 502 aa22.8■■□□□ 1.24
LIMCH1-211ENST00000509638 MLANAQ16655 118 aa22.8■■□□□ 1.24
LIMCH1-211ENST00000509638 ACSM6Q6P461 480 aa22.8■■□□□ 1.24
LIMCH1-211ENST00000509638 ZC4H2Q9NQZ6 224 aa22.8■■□□□ 1.24
LIMCH1-211ENST00000509638 CLEC3BP05452 202 aa22.79■■□□□ 1.24
LIMCH1-211ENST00000509638 ARL3P36405 182 aa22.79■■□□□ 1.24
LIMCH1-211ENST00000509638 CAV2P51636 162 aa22.79■■□□□ 1.24
LIMCH1-211ENST00000509638 MFAP4P55083 255 aa22.79■■□□□ 1.24
LIMCH1-211ENST00000509638 SLC16A13Q7RTY0 426 aa22.79■■□□□ 1.24
LIMCH1-211ENST00000509638 OR5AC2Q9NZP5 309 aa22.79■■□□□ 1.24
LIMCH1-211ENST00000509638 MRPL36Q9P0J6 103 aaKnown RBP22.79■■□□□ 1.24
LIMCH1-211ENST00000509638 GIPP09681 153 aaPredicted RBP22.78■■□□□ 1.24
LIMCH1-211ENST00000509638 METTL15P1P0C7V9 234 aa22.78■■□□□ 1.24
LIMCH1-211ENST00000509638 PET100P0DJ07 73 aa22.78■■□□□ 1.24
LIMCH1-211ENST00000509638 HOXD3P31249 432 aaPredicted RBP22.78■■□□□ 1.24
LIMCH1-211ENST00000509638 BCAP31P51572 246 aa22.78■■□□□ 1.24
LIMCH1-211ENST00000509638 SLURP1P55000 103 aa22.78■■□□□ 1.24
LIMCH1-211ENST00000509638 CD69Q07108 199 aa22.78■■□□□ 1.24
LIMCH1-211ENST00000509638 TMEM14EPQ6UXP3 125 aa22.78■■□□□ 1.24
LIMCH1-211ENST00000509638 H0YIZ8 118 aa22.77■■□□□ 1.24
LIMCH1-211ENST00000509638 MPC2O95563 127 aa22.77■■□□□ 1.24
LIMCH1-211ENST00000509638 RLN2P04090 185 aa22.77■■□□□ 1.24
LIMCH1-211ENST00000509638 FCGR2BP31994 310 aaPredicted RBP22.77■■□□□ 1.24
LIMCH1-211ENST00000509638 OR8G2PQ6IF36 304 aa22.77■■□□□ 1.24
LIMCH1-211ENST00000509638 ETFRF1Q6IPR1 90 aa22.77■■□□□ 1.24
LIMCH1-211ENST00000509638 ATP6V0BQ99437 205 aa22.77■■□□□ 1.24
LIMCH1-211ENST00000509638 PRSS46E5RG02 174 aa22.76■■□□□ 1.23
LIMCH1-211ENST00000509638 SLC25A4P12235 298 aa22.76■■□□□ 1.23
LIMCH1-211ENST00000509638 ASB13Q8WXK3 278 aa22.76■■□□□ 1.23
LIMCH1-211ENST00000509638 BSCL2Q96G97 398 aaPredicted RBP22.76■■□□□ 1.23
LIMCH1-211ENST00000509638 LYRM2Q9NU23 88 aaPredicted RBP22.76■■□□□ 1.23
LIMCH1-211ENST00000509638 TGOLN2O43493 480 aa22.76■■□□□ 1.23
LIMCH1-211ENST00000509638 CCNKO75909 580 aa22.76■■□□□ 1.23
LIMCH1-211ENST00000509638 ZP3P21754 424 aa22.76■■□□□ 1.23
LIMCH1-211ENST00000509638 PRSS54Q6PEW0 395 aa22.76■■□□□ 1.23
LIMCH1-211ENST00000509638 LINC00482Q8N8I6 264 aa22.76■■□□□ 1.23
LIMCH1-211ENST00000509638 TXN2Q99757 166 aa22.76■■□□□ 1.23
LIMCH1-211ENST00000509638 CMYA5Q8N3K9 4069 aa22.75■■□□□ 1.23
LIMCH1-211ENST00000509638 E5RGE8 158 aa22.75■■□□□ 1.23
LIMCH1-211ENST00000509638 GNG7O60262 68 aa22.75■■□□□ 1.23
LIMCH1-211ENST00000509638 NPBWR1P48145 328 aa22.75■■□□□ 1.23
LIMCH1-211ENST00000509638 RND2P52198 227 aa22.75■■□□□ 1.23
LIMCH1-211ENST00000509638 RPEL1Q2QD12 228 aa22.75■■□□□ 1.23
LIMCH1-211ENST00000509638 GAR1Q9NY12 217 aaKnown RBP22.75■■□□□ 1.23
LIMCH1-211ENST00000509638 GGCTO75223 188 aaKnown RBP22.74■■□□□ 1.23
LIMCH1-211ENST00000509638 PRR31Q5SQ13 230 aa22.74■■□□□ 1.23
LIMCH1-211ENST00000509638 OR4X1Q8NH49 305 aa22.74■■□□□ 1.23
LIMCH1-211ENST00000509638 ACY3Q96HD9 319 aa22.74■■□□□ 1.23
LIMCH1-211ENST00000509638 CHRDL1Q9BU40 450 aa22.74■■□□□ 1.23
LIMCH1-211ENST00000509638 FAM24AA6NFZ4 105 aa22.73■■□□□ 1.23
LIMCH1-211ENST00000509638 PMS2P5A8MQ11 134 aa22.73■■□□□ 1.23
LIMCH1-211ENST00000509638 GPX4P36969 197 aaPredicted RBP22.73■■□□□ 1.23
LIMCH1-211ENST00000509638 RAP2BP61225 183 aa22.73■■□□□ 1.23
LIMCH1-211ENST00000509638 SPSB3Q6PJ21 355 aa22.73■■□□□ 1.23
LIMCH1-211ENST00000509638 ACOT7LQ6ZUV0 252 aa22.73■■□□□ 1.23
LIMCH1-211ENST00000509638 SLC35E1Q96K37 410 aa22.73■■□□□ 1.23
LIMCH1-211ENST00000509638 MBD2Q9UBB5 411 aa22.73■■□□□ 1.23
LIMCH1-211ENST00000509638 hCG_2014768A0A024R1R8 64 aa22.72■■□□□ 1.23
LIMCH1-211ENST00000509638 TMEM116Q8NCL8 245 aa22.72■■□□□ 1.23
LIMCH1-211ENST00000509638 CACNG8Q8WXS5 425 aa22.72■■□□□ 1.23
LIMCH1-211ENST00000509638 TRAV14DV4A0A0A6YYC5 116 aa22.72■■□□□ 1.23
LIMCH1-211ENST00000509638 IGSF23A1L1A6 192 aa22.72■■□□□ 1.23
LIMCH1-211ENST00000509638 CLN5O75503 358 aa22.72■■□□□ 1.23
LIMCH1-211ENST00000509638 OR2C1O95371 312 aa22.72■■□□□ 1.23
LIMCH1-211ENST00000509638 ADMP35318 185 aa22.72■■□□□ 1.23
LIMCH1-211ENST00000509638 HAPLN4Q86UW8 402 aa22.72■■□□□ 1.23
LIMCH1-211ENST00000509638 CHAC2Q8WUX2 184 aa22.72■■□□□ 1.23
LIMCH1-211ENST00000509638 RNF126Q9BV68 326 aa22.72■■□□□ 1.23
LIMCH1-211ENST00000509638 MGAM2Q2M2H8 2515 aa22.71■■□□□ 1.23
LIMCH1-211ENST00000509638 IGHV3-35A0A0C4DH35 117 aa22.71■■□□□ 1.23
LIMCH1-211ENST00000509638 NUPL2O15504 423 aaKnown RBP22.71■■□□□ 1.23
LIMCH1-211ENST00000509638 CTSGP08311 255 aa22.71■■□□□ 1.23
LIMCH1-211ENST00000509638 GAMTQ14353 236 aa22.71■■□□□ 1.23
LIMCH1-211ENST00000509638 TMEM252Q8N6L7 170 aa22.71■■□□□ 1.23
LIMCH1-211ENST00000509638 NPIPB3Q92617 1050 aa22.71■■□□□ 1.23
LIMCH1-211ENST00000509638 DLX4Q92988 240 aaPredicted RBP22.71■■□□□ 1.23
LIMCH1-211ENST00000509638 CST7O76096 145 aa22.7■■□□□ 1.22
LIMCH1-211ENST00000509638 P2RY1P47900 373 aa22.7■■□□□ 1.22
LIMCH1-211ENST00000509638 STX12Q86Y82 276 aa22.7■■□□□ 1.22
LIMCH1-211ENST00000509638 OR10P1Q8NGE3 313 aa22.7■■□□□ 1.22
LIMCH1-211ENST00000509638 DCUN1D4Q92564 292 aa22.7■■□□□ 1.22
LIMCH1-211ENST00000509638 SYNJ2BPP57105 145 aa22.69■■□□□ 1.22
LIMCH1-211ENST00000509638 ARL16Q0P5N6 197 aa22.69■■□□□ 1.22
LIMCH1-211ENST00000509638 OR2T35Q8NGX2 323 aa22.69■■□□□ 1.22
LIMCH1-211ENST00000509638 NOTCH3Q9UM47 2321 aa22.68■■□□□ 1.22
LIMCH1-211ENST00000509638 SULT1A1P50225 295 aa22.68■■□□□ 1.22
LIMCH1-211ENST00000509638 THAP6Q8TBB0 222 aa22.68■■□□□ 1.22
LIMCH1-211ENST00000509638 CD33P20138 364 aa22.67■■□□□ 1.22
LIMCH1-211ENST00000509638 FGL1Q08830 312 aa22.67■■□□□ 1.22
LIMCH1-211ENST00000509638 KLF5Q13887 457 aaPredicted RBP22.67■■□□□ 1.22
LIMCH1-211ENST00000509638 TREML4Q6UXN2 200 aa22.67■■□□□ 1.22
LIMCH1-211ENST00000509638 C1QL4Q86Z23 238 aa22.67■■□□□ 1.22
LIMCH1-211ENST00000509638 TMEM217Q8N7C4 229 aa22.67■■□□□ 1.22
LIMCH1-211ENST00000509638 SCGB2A1O75556 95 aa22.67■■□□□ 1.22
LIMCH1-211ENST00000509638 SCAF4O95104 1147 aaKnown RBP22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms