RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SLC38A11Q08AI6 406 aa7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 Q6P435 159 aa7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 H1FOOQ8IZA3 346 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 KLHDC1Q8N7A1 406 aa7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 RNASEH2CQ8TDP1 164 aaKnown RBP7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 SSMEM1Q8WWF3 244 aa7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 TM2D1Q9BX74 207 aa7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 LYRM2Q9NU23 88 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 RNF114Q9Y508 228 aa7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 PRAMEF5Q5TYX0 476 aa7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 ZNF818PQ6ZRF7 136 aa7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 LHFPL1Q86WI0 220 aa7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 ZNF114Q8NC26 417 aa7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 LYPD6BQ8NI32 183 aa7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 IGFBP2P18065 325 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 CEACAM6P40199 344 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 CDKN1BP46527 198 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 EFNA4P52798 201 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 ERVK11-1P61568 191 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 IL15RAQ13261 267 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 DAZAP2Q15038 168 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 ZNF726P1Q15940 193 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 OR8B3Q8NGG8 313 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 OR1N2Q8NGR9 330 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 COQ2Q96H96 371 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 OR8B2Q96RD0 313 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 CHODLQ9H9P2 273 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 CLEC5AQ9NY25 188 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 COX11Q9Y6N1 276 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 LOC105371242A0A075B767 164 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 TRGV10A0A0A0MS01 117 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 KIR2DL5BA0A0G2JN68 375 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 KIR2DL5BA0A0G2JPC4 375 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 TRDCB7Z8K6 153 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 M0R2Z0 102 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 FOXA3P55318 350 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 ARL16Q0P5N6 197 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 JMJD1CQ15652 2540 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 CYP2G1PQ6ZSU1 146 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 SETXQ7Z333 2677 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 KIR2DL5AQ8N109 375 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 MTURNQ8N3F0 131 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 FAM89BQ8N5H3 189 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 OR4B1Q8NGF8 309 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 OR10G8Q8NGN5 311 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 PTX4Q96A99 478 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 GAFA1Q96PS6 74 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 IL36GQ9NZH8 169 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 CTSZQ9UBR2 303 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 MUC21A0A0G2JKD1 596 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 MUC21A0A140T8X8 626 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 GAGE12BA1L429 117 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 GAGE10A6NGK3 116 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 OR7C2O60412 319 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 TOX4O94842 621 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 HBZP02008 142 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 REG1BP48304 166 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 MUC21Q5SSG8 566 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 RPP25LQ8N5L8 163 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 OR2T6Q8NHC8 308 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 NEU4Q8WWR8 484 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 MSI2Q96DH6 328 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 PSG11Q9UQ72 335 aa7.11□□□□□ -1.27
LIMCH1-209ENST00000509277 IGKV1D-13A0A0B4J2D9 117 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 A0A0G2JRQ6 117 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 HSBP1L1C9JCN9 74 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 MGST3O14880 152 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 SPINT2O43291 252 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 CIDEAO60543 219 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 IGKV1-13P0DP09 117 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 LYL1P12980 280 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 ZNF146Q15072 292 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 PDLIM3Q53GG5 364 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 GTF2H5Q6ZYL4 71 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 GALMQ96C23 342 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 ABHD14BQ96IU4 210 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 SRSF8Q9BRL6 282 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 A0A087X0K7 114 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 hDV102S1A0JD36 115 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 SH2D7A6NKC9 451 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 C12orf77C9JDV5 145 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 M0R1X1 148 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 CD24P25063 80 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 ACTL10Q5JWF8 245 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 ASCL4Q6XD76 172 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 GNB4Q9HAV0 340 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 IGHV4-30-2A0A087WSY4 118 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 RNF223E7ERA6 249 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 SYNGR2O43760 224 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 VDAC1P21796 283 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 TSPOP30536 169 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 PDLIM4P50479 330 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 RND2P52198 227 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 LINC00205P59089 165 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 RCHY1Q96PM5 261 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 TPPP3Q9BW30 176 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 SSBP4Q9BWG4 385 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 SMDT1Q9H4I9 107 aa7.1□□□□□ -1.27
LIMCH1-209ENST00000509277 IGKV1D-33P01593 117 aa7.09□□□□□ -1.27
LIMCH1-209ENST00000509277 IGKV1-33P01594 117 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms