RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 CEACAM1P13688 526 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 C2orf82Q6UX34 121 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 MYOFQ9NZM1 2061 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 TMEM8BA6NDV4 472 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 IQCF6A8MYZ5 107 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 SRSF3P84103 164 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 PSG7Q13046 419 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 C21orf62Q9NYP8 219 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 MRPS18CQ9Y3D5 142 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 TSSC4Q9Y5U2 329 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 LTBP4Q8N2S1 1624 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 IGKV1D-13A0A0B4J2D9 117 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 HIGD1CA8MV81 97 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 CEACAM4O75871 244 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 IGKV1-13P0DP09 117 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 RASL11AQ6T310 242 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 KIR3DL3Q8N743 410 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 FER1L6-AS1Q8NA97 138 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 IGKV1-9A0A0C4DH69 117 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 DPM2O94777 84 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 APOBEC3AP31941 199 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 SIGLEC12Q96PQ1 595 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 Q9H3A6 140 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 CACNA1DQ01668 2161 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 VWC2LB2RUY7 222 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 M0R381 172 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 NPFFO15130 113 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 HEPN1Q6WQI6 88 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 FAM216BQ8N7L0 139 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 PLPPR1Q8TBJ4 325 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 WBP1Q96G27 269 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 OTORQ9NRC9 128 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 FOXD3Q9UJU5 478 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 FOXA2Q9Y261 457 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 LINC00312Q9Y6C7 94 aa8.59□□□□□ -1.03
LIMCH1-203ENST00000396595 A0A1W2PRE2 83 aa8.59□□□□□ -1.04
LIMCH1-203ENST00000396595 C1QTNF9P0C862 333 aa8.59□□□□□ -1.04
LIMCH1-203ENST00000396595 DUX5Q96PT3 197 aa8.59□□□□□ -1.04
LIMCH1-203ENST00000396595 PRR32B1ATL7 298 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 C9orf172C9J069 976 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 UPK2O00526 184 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 EREGO14944 169 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 YPEL1O60688 119 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 CELA3AP09093 270 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 YPEL2Q96QA6 119 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 MRPL20Q9BYC9 149 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 COL11A2P13942 1736 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 TRBV20-1A0A075B6N2 111 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 IGHV2OR16-5A0A0B4J2B6 119 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 ATP1A1-AS1Q5TC04 95 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 MORN3Q6PF18 240 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 ZNF837Q96EG3 531 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 IMMP1LQ96LU5 166 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 GDF15Q99988 308 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 FBXL7Q9UJT9 491 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 PARP14Q460N5 1801 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 M0R2P5 195 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 AMBPP02760 352 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 CD5P06127 495 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 GAS1P54826 345 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 PAQR4Q8N4S7 273 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 SMIM20Q8N5G0 67 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 TMEM242Q9NWH2 141 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 SEMA5BQ9P283 1151 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 TRBV24-1A0A075B6N3 115 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 A0A1B0GWJ7 208 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 IGLV3-19P01714 112 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 TRGV3P03979 118 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 LEPP41159 167 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 LHX2P50458 406 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 GAGE5Q13069 117 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 GAGE6Q13070 117 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 LY6EQ16553 131 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 DCTN5Q9BTE1 182 aa8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 MBNL3Q9NUK0 354 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 RBBP6Q7Z6E9 1792 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-203ENST00000396595 MDC1Q14676 2089 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 SCN10AQ9Y5Y9 1956 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 IGLV3-12A0A075B6K2 115 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 IGHV3OR16-13A0A075B7E8 117 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 IGHV3-74A0A0B4J1X5 117 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 GAGE12JA6NER3 117 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 FCN3O75636 299 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 GAGE7O76087 117 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 GAGE12FP0CL80 117 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 GAGE12GP0CL81 117 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 GAGE12IP0CL82 117 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 PDLIM4P50479 330 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 GAGE4Q13068 117 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 C15orf61A6NNL5 157 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 GATA2P23769 480 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 GFI1Q99684 422 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 WDR83OSQ9Y284 106 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 IGLV3-32A0A0A0MS00 114 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 C9JCJ5 164 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 NAPSAO96009 420 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 RNASE7Q9H1E1 156 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 TNFRSF18Q9Y5U5 241 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 LRRC37AA6NMS7 1700 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 KIF26BQ2KJY2 2108 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms