RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 HNF4GQ14541 408 aa14.54□□□□□ -0.08
CCDC88C-203ENST00000389856 BSXQ3C1V8 233 aa14.54□□□□□ -0.08
CCDC88C-203ENST00000389856 NANPQ8TBE9 248 aa14.54□□□□□ -0.08
CCDC88C-203ENST00000389856 DOPEY2Q9Y3R5 2298 aa14.54□□□□□ -0.08
CCDC88C-203ENST00000389856 RNF223E7ERA6 249 aa14.53□□□□□ -0.08
CCDC88C-203ENST00000389856 C5orf64Q2M2E5 130 aa14.53□□□□□ -0.08
CCDC88C-203ENST00000389856 Q8N6K4 173 aa14.53□□□□□ -0.08
CCDC88C-203ENST00000389856 RNASEH2CQ8TDP1 164 aaKnown RBP14.53□□□□□ -0.08
CCDC88C-203ENST00000389856 GGTLC1Q9BX51 225 aa14.53□□□□□ -0.08
CCDC88C-203ENST00000389856 TPSG1Q9NRR2 321 aa14.53□□□□□ -0.08
CCDC88C-203ENST00000389856 ABCA2Q9BZC7 2435 aa14.53□□□□□ -0.08
CCDC88C-203ENST00000389856 F6UZH7 168 aa14.52□□□□□ -0.08
CCDC88C-203ENST00000389856 RNASE2P10153 161 aaKnown RBP14.52□□□□□ -0.08
CCDC88C-203ENST00000389856 RPL29P47914 159 aaKnown RBP14.52□□□□□ -0.08
CCDC88C-203ENST00000389856 TEPPQ6URK8 271 aa14.52□□□□□ -0.08
CCDC88C-203ENST00000389856 DYNAPQ8N1N2 210 aa14.52□□□□□ -0.08
CCDC88C-203ENST00000389856 PXMP4Q9Y6I8 212 aa14.52□□□□□ -0.08
CCDC88C-203ENST00000389856 NCBP2LA6PVI3 153 aaKnown RBP14.52□□□□□ -0.09
CCDC88C-203ENST00000389856 AP4M1O00189 453 aa14.52□□□□□ -0.09
CCDC88C-203ENST00000389856 CORTO00230 105 aa14.52□□□□□ -0.09
CCDC88C-203ENST00000389856 RPS10P46783 165 aaKnown RBP14.52□□□□□ -0.09
CCDC88C-203ENST00000389856 SNRPEP62304 92 aaKnown RBP14.52□□□□□ -0.09
CCDC88C-203ENST00000389856 PIP4P2Q8N4L2 257 aa14.52□□□□□ -0.09
CCDC88C-203ENST00000389856 ZNF114Q8NC26 417 aa14.52□□□□□ -0.09
CCDC88C-203ENST00000389856 OR10W1Q8NGF6 305 aa14.52□□□□□ -0.09
CCDC88C-203ENST00000389856 Q8WTZ3 238 aa14.52□□□□□ -0.09
CCDC88C-203ENST00000389856 TMEM170AQ8WVE7 144 aa14.52□□□□□ -0.09
CCDC88C-203ENST00000389856 CACNG8Q8WXS5 425 aa14.52□□□□□ -0.09
CCDC88C-203ENST00000389856 Q96MF0 132 aa14.52□□□□□ -0.09
CCDC88C-203ENST00000389856 MGST2Q99735 147 aa14.52□□□□□ -0.09
CCDC88C-203ENST00000389856 PTPN13Q12923 2485 aa14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 TRBV24-1A0A075B6N3 115 aa14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 CXorf1O96002 111 aa14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 TGFAP01135 160 aa14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 STAG3L2P0CL84 134 aa14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 STAG3L3P0CL85 134 aa14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 GPX4P36969 197 aaPredicted RBP14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 RPL35P42766 123 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 MRGPRG-AS1Q2M3A8 158 aa14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 ETFRF1Q6IPR1 90 aa14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 OR1L6Q8NGR2 347 aa14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 OR4F5Q8NH21 305 aa14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 SRSF12Q8WXF0 261 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 OR4F4Q96R69 305 aa14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 MEGF9Q9H1U4 602 aa14.51□□□□□ -0.09
CCDC88C-203ENST00000389856 TNCP24821 2201 aa14.5□□□□□ -0.09
CCDC88C-203ENST00000389856 ZNF98A6NK75 572 aa14.5□□□□□ -0.09
CCDC88C-203ENST00000389856 YIF1AO95070 293 aa14.5□□□□□ -0.09
CCDC88C-203ENST00000389856 MT-CO2P00403 227 aa14.5□□□□□ -0.09
CCDC88C-203ENST00000389856 RHOBP62745 196 aa14.5□□□□□ -0.09
CCDC88C-203ENST00000389856 WT1-ASQ06250 92 aa14.5□□□□□ -0.09
CCDC88C-203ENST00000389856 C10orf55Q5SWW7 151 aa14.5□□□□□ -0.09
CCDC88C-203ENST00000389856 AJUBAQ96IF1 538 aa14.5□□□□□ -0.09
CCDC88C-203ENST00000389856 TMPRSS5Q9H3S3 457 aa14.5□□□□□ -0.09
CCDC88C-203ENST00000389856 ARL2-SNX15V9GYD0 113 aa14.5□□□□□ -0.09
CCDC88C-203ENST00000389856 FLNBO75369 2602 aaKnown RBP14.49□□□□□ -0.09
CCDC88C-203ENST00000389856 PAGE4O60829 102 aa14.49□□□□□ -0.09
CCDC88C-203ENST00000389856 CD24P25063 80 aa14.49□□□□□ -0.09
CCDC88C-203ENST00000389856 TEX29Q8N6K0 151 aa14.49□□□□□ -0.09
CCDC88C-203ENST00000389856 ABHD5Q8WTS1 349 aa14.49□□□□□ -0.09
CCDC88C-203ENST00000389856 ANAPC16Q96DE5 110 aa14.49□□□□□ -0.09
CCDC88C-203ENST00000389856 SLC35E1Q96K37 410 aa14.49□□□□□ -0.09
CCDC88C-203ENST00000389856 RASL11BQ9BPW5 248 aa14.49□□□□□ -0.09
CCDC88C-203ENST00000389856 C19orf24Q9BVV8 132 aa14.49□□□□□ -0.09
CCDC88C-203ENST00000389856 PARLQ9H300 379 aa14.49□□□□□ -0.09
CCDC88C-203ENST00000389856 NAV2Q8IVL1 2488 aa14.49□□□□□ -0.09
CCDC88C-203ENST00000389856 MED13LQ71F56 2210 aa14.49□□□□□ -0.09
CCDC88C-203ENST00000389856 IGLC7A0M8Q6 106 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 CGB1A6NKQ9 187 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 C11orf94C9JXX5 98 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 SMIM6P0DI80 62 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 ZNF562Q6V9R5 426 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 OR1P1Q8NH06 330 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 C22orf15Q8WYQ4 148 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 DOK5Q9P104 306 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 S100A9P06702 114 aaKnown RBP14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 IGHV4-31P0DP07 118 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 CD99P14209 185 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 MEOX2P50222 304 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 B2MP61769 119 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 RPL23P62829 140 aaKnown RBP14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 CD69Q07108 199 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 KIAA0141Q14154 515 aaPredicted RBP14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 FXYD3Q14802 87 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 ZNF674Q2M3X9 581 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 ARSJQ5FYB0 599 aaPredicted RBP14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 RUSC1-AS1Q66K80 236 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 CYB5R2Q6BCY4 276 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 TMEM144Q7Z5S9 345 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 IQCF2Q8IXL9 164 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 BTF3L4Q96K17 158 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 FAM210BQ96KR6 192 aa14.48□□□□□ -0.09
CCDC88C-203ENST00000389856 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.47□□□□□ -0.09
CCDC88C-203ENST00000389856 SETXQ7Z333 2677 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-203ENST00000389856 IGHV3OR16-10A0A075B7F0 116 aa14.47□□□□□ -0.09
CCDC88C-203ENST00000389856 E7EUB6 86 aa14.47□□□□□ -0.09
CCDC88C-203ENST00000389856 HMGB3O15347 200 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-203ENST00000389856 CLN5O75503 358 aa14.47□□□□□ -0.09
CCDC88C-203ENST00000389856 CXCL1P09341 107 aa14.47□□□□□ -0.09
CCDC88C-203ENST00000389856 IGHV4-38-2P0DP08 117 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms