RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 TMEM136Q6ZRR5 245 aa11.29□□□□□ -0.6
GPC6-201ENST00000377047 CXorf65A6NEN9 183 aa11.29□□□□□ -0.6
GPC6-201ENST00000377047 H3BUX3 64 aa11.29□□□□□ -0.6
GPC6-201ENST00000377047 FBLN7Q53RD9 439 aa11.29□□□□□ -0.6
GPC6-201ENST00000377047 FAM209BQ5JX69 171 aa11.29□□□□□ -0.6
GPC6-201ENST00000377047 SNRNP200O75643 2136 aaKnown RBP11.29□□□□□ -0.6
GPC6-201ENST00000377047 VENTXO95231 258 aa11.29□□□□□ -0.6
GPC6-201ENST00000377047 PRR30Q53SZ7 412 aaPredicted RBP11.29□□□□□ -0.6
GPC6-201ENST00000377047 OR10W1Q8NGF6 305 aa11.29□□□□□ -0.6
GPC6-201ENST00000377047 BEX4Q9NWD9 120 aaPredicted RBP11.29□□□□□ -0.6
GPC6-201ENST00000377047 A0A0A6YYD4 124 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 MBD3L4A6NDZ8 208 aaPredicted RBP11.28□□□□□ -0.6
GPC6-201ENST00000377047 MBD3L3A6NE82 208 aaPredicted RBP11.28□□□□□ -0.6
GPC6-201ENST00000377047 MBD3L5A6NJ08 208 aaPredicted RBP11.28□□□□□ -0.6
GPC6-201ENST00000377047 TPTE2P1Q5T6R2 138 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 MBD3L2Q8NHZ7 208 aaPredicted RBP11.28□□□□□ -0.6
GPC6-201ENST00000377047 KCNS1Q96KK3 526 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 TRGV4A0A0C4DH28 118 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 TMEM8BA6NDV4 472 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 CD55P08174 381 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 CFAP161Q6P656 301 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 IL36BQ9NZH7 164 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 SCGB1A1P11684 91 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 MALP21145 153 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 PRCDQ00LT1 54 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 PSMG4Q5JS54 123 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 ERASQ7Z444 233 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 ZNF362Q5T0B9 420 aaPredicted RBP11.28□□□□□ -0.6
GPC6-201ENST00000377047 APOHP02749 345 aaPredicted RBP11.28□□□□□ -0.6
GPC6-201ENST00000377047 LRTM2Q8N967 370 aa11.28□□□□□ -0.6
GPC6-201ENST00000377047 K7ENP7 123 aa11.27□□□□□ -0.6
GPC6-201ENST00000377047 SIGLEC15Q6ZMC9 328 aa11.27□□□□□ -0.6
GPC6-201ENST00000377047 ZNF414Q96IQ9 312 aa11.27□□□□□ -0.6
GPC6-201ENST00000377047 LY6HO94772 140 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 OR10J3Q5JRS4 329 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 NHLRC3Q5JS37 347 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 IGHV1-3A0A0C4DH29 117 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 IGKV1-12A0A0C4DH73 117 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 IGKV1D-12P01611 117 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 FABP2P12104 132 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 SLC25A34Q6PIV7 304 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 NEUROG1Q92886 237 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 RPUSD1Q9UJJ7 312 aaKnown RBP11.27□□□□□ -0.61
GPC6-201ENST00000377047 H3BRM9 83 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 PRB4P10163 310 aaPredicted RBP11.27□□□□□ -0.61
GPC6-201ENST00000377047 NAT1P18440 290 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 TMEM42Q69YG0 159 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 CD177Q8N6Q3 437 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 ZNF257Q9Y2Q1 563 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 FABP5P3A8MUU1 101 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 PYYP10082 97 aa11.27□□□□□ -0.61
GPC6-201ENST00000377047 SDHCQ99643 169 aaPredicted RBP11.27□□□□□ -0.61
GPC6-201ENST00000377047 ANK1P16157 1881 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 LHFPL4Q7Z7J7 247 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 UBE2DNLQ8IWF7 75 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 TRAV8-6A0A0B4J262 113 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 KIR3DL3Q8N743 410 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 LINC01356Q8N9X3 169 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 ASCL2Q99929 193 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 IGKV3D-20A0A0C4DH25 116 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 FAM131CQ96AQ9 280 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 COL8A2P25067 703 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 GAS1P54826 345 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 ERVK11-1P61568 191 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 C15orf32Q32M92 178 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 MINOS1Q5TGZ0 78 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 MINOS1-NBL1R4GNA1 71 aa11.26□□□□□ -0.61
GPC6-201ENST00000377047 TRAV21A0A0B4J279 112 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 OR11H12B2RN74 326 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 HEPN1Q6WQI6 88 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 OR11H1Q8NG94 326 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 OR11H2Q8NH07 326 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 KLHDC3Q9BQ90 382 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 BPESC1Q9GZL8 116 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 C10orf55Q5SWW7 151 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 SLC25A16P16260 332 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 COL5A1-AS1Q5SY13 56 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 MBNL3Q9NUK0 354 aaKnown RBP11.25□□□□□ -0.61
GPC6-201ENST00000377047 DNAL4O96015 105 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 ZNF415Q09FC8 603 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 C12orf54Q6X4T0 127 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 FAM89BQ8N5H3 189 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 FOXC2Q99958 501 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 RNF223E7ERA6 249 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 IGHG3P01860 377 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 CACNG7P62955 275 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 SRSF7Q16629 238 aaKnown RBP eCLIP11.25□□□□□ -0.61
GPC6-201ENST00000377047 NR2C2APQ86WQ0 139 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 IMMP2LQ96T52 175 aa11.25□□□□□ -0.61
GPC6-201ENST00000377047 IGKV1D-8A0A087WSZ0 117 aa11.24□□□□□ -0.61
GPC6-201ENST00000377047 C1QTNF9BB2RNN3 333 aa11.24□□□□□ -0.61
GPC6-201ENST00000377047 C1QTNF9P0C862 333 aa11.24□□□□□ -0.61
GPC6-201ENST00000377047 ZNF474Q6S9Z5 364 aaPredicted RBP11.24□□□□□ -0.61
GPC6-201ENST00000377047 FBLN5Q9UBX5 448 aa11.24□□□□□ -0.61
GPC6-201ENST00000377047 TMEM50AO95807 157 aa11.24□□□□□ -0.61
GPC6-201ENST00000377047 Q6AWC8 147 aa11.24□□□□□ -0.61
GPC6-201ENST00000377047 IGKV1-27A0A075B6S5 117 aa11.24□□□□□ -0.61
GPC6-201ENST00000377047 SDK2Q58EX2 2172 aa11.24□□□□□ -0.61
GPC6-201ENST00000377047 PSPNO60542 156 aa11.24□□□□□ -0.61
GPC6-201ENST00000377047 CRPP02741 224 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms