RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 COX6B1P14854 86 aa12.38□□□□□ -0.43
CHD4-201ENST00000357008 TIMP3P35625 211 aa12.38□□□□□ -0.43
CHD4-201ENST00000357008 SLC50A1Q9BRV3 221 aa12.38□□□□□ -0.43
CHD4-201ENST00000357008 SUPT4H1P63272 117 aaKnown RBP12.38□□□□□ -0.43
CHD4-201ENST00000357008 ZNF236Q9UL36 1845 aa12.38□□□□□ -0.43
CHD4-201ENST00000357008 CEACAM1P13688 526 aa12.38□□□□□ -0.43
CHD4-201ENST00000357008 SRSF1Q07955 248 aaKnown RBP eCLIP12.38□□□□□ -0.431e-7■□□□□ 10.9
CHD4-201ENST00000357008 TRAV8-2A0A0B4J237 113 aa12.38□□□□□ -0.43
CHD4-201ENST00000357008 DUTP33316 252 aaKnown RBP12.38□□□□□ -0.43
CHD4-201ENST00000357008 OR2K2Q8NGT1 345 aa12.38□□□□□ -0.43
CHD4-201ENST00000357008 PSG8Q9UQ74 426 aa12.38□□□□□ -0.43
CHD4-201ENST00000357008 ZNF585BQ52M93 769 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 LDLRAD2Q5SZI1 272 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 MYOFQ9NZM1 2061 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 TGFAP01135 160 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 MS4A6AQ9H2W1 248 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 PARP14Q460N5 1801 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 SCN8AQ9UQD0 1980 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 LINC01560Q8TB33 94 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 RNF125Q96EQ8 232 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 RBBP6Q7Z6E9 1792 aaKnown RBP12.37□□□□□ -0.43
CHD4-201ENST00000357008 C17orf100A8MU93 164 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 TMEM262E9PQX1 116 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 OR9G9P0C7N8 305 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 SP9P0CG40 484 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 CLEC19AQ6UXS0 136 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 FLVCR1-AS1Q8TAF5 88 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 MDC1Q14676 2089 aaKnown RBP12.37□□□□□ -0.43
CHD4-201ENST00000357008 CACNG7P62955 275 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 FAM71F2Q6NXP2 309 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 BEND2Q8NDZ0 799 aa12.37□□□□□ -0.43
CHD4-201ENST00000357008 LHX2P50458 406 aa12.36□□□□□ -0.43
CHD4-201ENST00000357008 C1orf194Q5T5A4 169 aa12.36□□□□□ -0.43
CHD4-201ENST00000357008 NEU4Q8WWR8 484 aaPredicted RBP12.36□□□□□ -0.43
CHD4-201ENST00000357008 COL11A2P13942 1736 aaPredicted RBP12.36□□□□□ -0.43
CHD4-201ENST00000357008 IGHV3OR16-10A0A075B7F0 116 aa12.36□□□□□ -0.43
CHD4-201ENST00000357008 RNASE4P34096 147 aaKnown RBP12.36□□□□□ -0.43
CHD4-201ENST00000357008 OR5AN1Q8NGI8 311 aa12.36□□□□□ -0.43
CHD4-201ENST00000357008 VKORC1Q9BQB6 163 aa12.36□□□□□ -0.43
CHD4-201ENST00000357008 PRR19A6NJB7 356 aa12.36□□□□□ -0.43
CHD4-201ENST00000357008 HSD52Q0P140 79 aa12.36□□□□□ -0.43
CHD4-201ENST00000357008 NBR2O15453 112 aa12.36□□□□□ -0.43
CHD4-201ENST00000357008 CCL3L1P16619 93 aa12.36□□□□□ -0.43
CHD4-201ENST00000357008 IGHV3OR16-8A0A075B7F1 116 aa12.36□□□□□ -0.43
CHD4-201ENST00000357008 CNTFRP26992 372 aa12.36□□□□□ -0.43
CHD4-201ENST00000357008 ESPL1Q14674 2120 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 LOC102723996A0A087X1L8 192 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 BSPH1Q075Z2 132 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 SLC25A2Q9BXI2 301 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 CRYGSP22914 178 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 TREML4Q6UXN2 200 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 SIGMAR1Q99720 223 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 HOXA3O43365 443 aaPredicted RBP12.35□□□□□ -0.43
CHD4-201ENST00000357008 IFI27L1Q96BM0 104 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 IGKV1-12A0A0C4DH73 117 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 IGKV1D-12P01611 117 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 UMODP07911 640 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 ORMDL2Q53FV1 153 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 DUX3Q96PT4 197 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 VWCEQ96DN2 955 aa12.35□□□□□ -0.43
CHD4-201ENST00000357008 ZIC4Q8N9L1 334 aa12.34□□□□□ -0.43
CHD4-201ENST00000357008 RTTNQ86VV8 2226 aa12.34□□□□□ -0.43
CHD4-201ENST00000357008 TRBV7-9A0A0J9YWB2 115 aa12.34□□□□□ -0.43
CHD4-201ENST00000357008 ZNF883P0CG24 379 aa12.34□□□□□ -0.43
CHD4-201ENST00000357008 ARID2Q68CP9 1835 aa12.34□□□□□ -0.43
CHD4-201ENST00000357008 IGKCP01834 107 aa12.34□□□□□ -0.43
CHD4-201ENST00000357008 GGTLC1Q9BX51 225 aa12.34□□□□□ -0.43
CHD4-201ENST00000357008 LRRC37AA6NMS7 1700 aa12.34□□□□□ -0.43
CHD4-201ENST00000357008 IFI27P40305 119 aaPredicted RBP12.34□□□□□ -0.43
CHD4-201ENST00000357008 LINC01551Q86U37 167 aa12.34□□□□□ -0.43
CHD4-201ENST00000357008 TMEM190Q8WZ59 177 aa12.34□□□□□ -0.43
CHD4-201ENST00000357008 DMRTA2Q96SC8 542 aa12.34□□□□□ -0.43
CHD4-201ENST00000357008 CYSLTR1Q9Y271 337 aa12.34□□□□□ -0.43
CHD4-201ENST00000357008 LTBP4Q8N2S1 1624 aa12.34□□□□□ -0.43
CHD4-201ENST00000357008 MTCL1Q9Y4B5 1905 aaKnown RBP12.34□□□□□ -0.43
CHD4-201ENST00000357008 TMEM95Q3KNT9 176 aa12.33□□□□□ -0.43
CHD4-201ENST00000357008 NUDT10Q8NFP7 164 aa12.33□□□□□ -0.43
CHD4-201ENST00000357008 LINC01559Q495D7 138 aa12.33□□□□□ -0.44
CHD4-201ENST00000357008 OR9G4Q8NGQ1 327 aa12.33□□□□□ -0.44
CHD4-201ENST00000357008 SCN10AQ9Y5Y9 1956 aa12.33□□□□□ -0.44
CHD4-201ENST00000357008 RBMY1BA6NDE4 496 aaKnown RBP12.33□□□□□ -0.44
CHD4-201ENST00000357008 RBMY1EA6NEQ0 496 aaKnown RBP12.33□□□□□ -0.44
CHD4-201ENST00000357008 A6NNC1 897 aa12.33□□□□□ -0.44
CHD4-201ENST00000357008 RBMY1DP0C7P1 496 aaKnown RBP12.33□□□□□ -0.44
CHD4-201ENST00000357008 RBMY1A1P0DJD3 496 aaKnown RBP12.33□□□□□ -0.44
CHD4-201ENST00000357008 RBMY1CP0DJD4 496 aa12.33□□□□□ -0.44
CHD4-201ENST00000357008 GZMBP10144 247 aa12.33□□□□□ -0.44
CHD4-201ENST00000357008 ERVK11-1P61568 191 aa12.33□□□□□ -0.44
CHD4-201ENST00000357008 RASL11AQ6T310 242 aa12.33□□□□□ -0.44
CHD4-201ENST00000357008 ZNF479Q96JC4 524 aa12.33□□□□□ -0.44
CHD4-201ENST00000357008 TMEM133Q9H2Q1 129 aa12.33□□□□□ -0.44
CHD4-201ENST00000357008 C9orf106Q8NAJ2 232 aa12.33□□□□□ -0.44
CHD4-201ENST00000357008 SMPXQ9UHP9 88 aa12.33□□□□□ -0.44
CHD4-201ENST00000357008 F2Z2F3 143 aa12.32□□□□□ -0.44
CHD4-201ENST00000357008 C8orf46Q8TAG6 207 aa12.32□□□□□ -0.44
CHD4-201ENST00000357008 DLEU1O43261 78 aa12.32□□□□□ -0.44
CHD4-201ENST00000357008 RPP25LQ8N5L8 163 aaKnown RBP12.32□□□□□ -0.44
CHD4-201ENST00000357008 TOMM7Q9P0U1 55 aa12.32□□□□□ -0.44
CHD4-201ENST00000357008 MST1P26927 711 aa12.32□□□□□ -0.44
CHD4-201ENST00000357008 NMSQ5H8A3 153 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms