RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ARL3P36405 182 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 SUPT4H1P63272 117 aaKnown RBP12.04□□□□□ -0.48
CLN3-201ENST00000333496 OR2F1Q13607 317 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 ADAMTSL5Q6ZMM2 481 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 Q6ZRM9 215 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 OR2C3Q8N628 320 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 PDCD10Q9BUL8 212 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 THYN1Q9P016 225 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 CLEC3BP05452 202 aa12.03□□□□□ -0.48
CLN3-201ENST00000333496 NMBP08949 121 aa12.03□□□□□ -0.48
CLN3-201ENST00000333496 EDN2P20800 178 aa12.03□□□□□ -0.48
CLN3-201ENST00000333496 SPINK9Q5DT21 86 aa12.03□□□□□ -0.48
CLN3-201ENST00000333496 SELENOHQ8IZQ5 122 aaKnown RBP12.03□□□□□ -0.48
CLN3-201ENST00000333496 ZC4H2Q9NQZ6 224 aa12.03□□□□□ -0.48
CLN3-201ENST00000333496 SIGLEC8Q9NYZ4 499 aa12.03□□□□□ -0.48
CLN3-201ENST00000333496 IGHV3-21A0A0B4J1V1 117 aa12.02□□□□□ -0.49
CLN3-201ENST00000333496 ST8SIA3O43173 380 aa12.02□□□□□ -0.49
CLN3-201ENST00000333496 ATG12O94817 140 aa12.02□□□□□ -0.49
CLN3-201ENST00000333496 GP9P14770 177 aa12.02□□□□□ -0.49
CLN3-201ENST00000333496 C11orf87Q6NUJ2 197 aa12.02□□□□□ -0.49
CLN3-201ENST00000333496 ZNF546Q86UE3 836 aa12.02□□□□□ -0.49
CLN3-201ENST00000333496 GPHB5Q86YW7 130 aa12.02□□□□□ -0.49
CLN3-201ENST00000333496 SGPP2Q8IWX5 399 aa12.02□□□□□ -0.49
CLN3-201ENST00000333496 KCNRGQ8N5I3 272 aa12.02□□□□□ -0.49
CLN3-201ENST00000333496 VN1R17PQ8TDU5 208 aa12.02□□□□□ -0.49
CLN3-201ENST00000333496 GALNT14Q96FL9 552 aa12.02□□□□□ -0.49
CLN3-201ENST00000333496 PEMTQ9UBM1 199 aa12.02□□□□□ -0.49
CLN3-201ENST00000333496 TNFSF18Q9UNG2 199 aa12.02□□□□□ -0.49
CLN3-201ENST00000333496 KANTRA0A1W2PQU2 76 aa12.01□□□□□ -0.49
CLN3-201ENST00000333496 F8W735 103 aaPredicted RBP12.01□□□□□ -0.49
CLN3-201ENST00000333496 K7EIM0 57 aa12.01□□□□□ -0.49
CLN3-201ENST00000333496 CYB5BO43169 146 aa12.01□□□□□ -0.49
CLN3-201ENST00000333496 GPR183P32249 361 aa12.01□□□□□ -0.49
CLN3-201ENST00000333496 TMEM187Q14656 261 aa12.01□□□□□ -0.49
CLN3-201ENST00000333496 ALKAL2Q6UX46 152 aa12.01□□□□□ -0.49
CLN3-201ENST00000333496 ZNF114Q8NC26 417 aa12.01□□□□□ -0.49
CLN3-201ENST00000333496 OR1P1Q8NH06 330 aa12.01□□□□□ -0.49
CLN3-201ENST00000333496 RRNAD1Q96FB5 475 aaKnown RBP12.01□□□□□ -0.49
CLN3-201ENST00000333496 SLC25A32Q9H2D1 315 aa12.01□□□□□ -0.49
CLN3-201ENST00000333496 PRR13Q9NZ81 148 aa12.01□□□□□ -0.49
CLN3-201ENST00000333496 TMEM56-RWDD3S4R434 201 aa12.01□□□□□ -0.49
CLN3-201ENST00000333496 A0A0B4J2A0 478 aa12□□□□□ -0.49
CLN3-201ENST00000333496 KRBOX1C9JBD0 128 aa12□□□□□ -0.49
CLN3-201ENST00000333496 LGALS9O00182 355 aa12□□□□□ -0.49
CLN3-201ENST00000333496 BCL2L11O43521 198 aa12□□□□□ -0.49
CLN3-201ENST00000333496 TMEM268Q5VZI3 342 aa12□□□□□ -0.49
CLN3-201ENST00000333496 OR1L6Q8NGR2 347 aa12□□□□□ -0.49
CLN3-201ENST00000333496 COQ8AQ8NI60 647 aa12□□□□□ -0.49
CLN3-201ENST00000333496 PHYHIPLQ96FC7 376 aa12□□□□□ -0.49
CLN3-201ENST00000333496 B9D2Q9BPU9 175 aa12□□□□□ -0.49
CLN3-201ENST00000333496 PLEKHA3Q9HB20 300 aa12□□□□□ -0.49
CLN3-201ENST00000333496 SHPKQ9UHJ6 478 aa12□□□□□ -0.49
CLN3-201ENST00000333496 TMA7Q9Y2S6 64 aaKnown RBP12□□□□□ -0.49
CLN3-201ENST00000333496 CYCSP99999 105 aaKnown RBP12□□□□□ -0.49
CLN3-201ENST00000333496 ANKRD55Q3KP44 614 aa12□□□□□ -0.49
CLN3-201ENST00000333496 AARDQ4LEZ3 155 aa12□□□□□ -0.49
CLN3-201ENST00000333496 ACOT7LQ6ZUV0 252 aa12□□□□□ -0.49
CLN3-201ENST00000333496 FAM219AQ8IW50 185 aa12□□□□□ -0.49
CLN3-201ENST00000333496 EIF4E3Q8N5X7 224 aaKnown RBP12□□□□□ -0.49
CLN3-201ENST00000333496 RNASE11Q8TAA1 199 aaKnown RBP12□□□□□ -0.49
CLN3-201ENST00000333496 PCNPQ8WW12 178 aaKnown RBP12□□□□□ -0.49
CLN3-201ENST00000333496 ST8SIA2Q92186 375 aa12□□□□□ -0.49
CLN3-201ENST00000333496 GPR146Q96CH1 333 aa12□□□□□ -0.49
CLN3-201ENST00000333496 KCNIP3Q9Y2W7 256 aa12□□□□□ -0.49
CLN3-201ENST00000333496 IGHV3-35A0A0C4DH35 117 aa11.99□□□□□ -0.49
CLN3-201ENST00000333496 IZUMO1RA6ND01 250 aa11.99□□□□□ -0.49
CLN3-201ENST00000333496 OR2T8A6NH00 312 aa11.99□□□□□ -0.49
CLN3-201ENST00000333496 C2orf70A6NJV1 201 aa11.99□□□□□ -0.49
CLN3-201ENST00000333496 INS-IGF2F8WCM5 200 aa11.99□□□□□ -0.49
CLN3-201ENST00000333496 I3L2K1 104 aa11.99□□□□□ -0.49
CLN3-201ENST00000333496 IFNA17P01571 189 aa11.99□□□□□ -0.49
CLN3-201ENST00000333496 ERHP84090 104 aaKnown RBP11.99□□□□□ -0.49
CLN3-201ENST00000333496 UNQ9165/PRO28630Q6UXU0 137 aa11.99□□□□□ -0.49
CLN3-201ENST00000333496 THAP6Q8TBB0 222 aa11.99□□□□□ -0.49
CLN3-201ENST00000333496 NMES1Q9C002 83 aa11.99□□□□□ -0.49
CLN3-201ENST00000333496 TGOLN2O43493 480 aa11.98□□□□□ -0.49
CLN3-201ENST00000333496 FOLR2P14207 255 aa11.98□□□□□ -0.49
CLN3-201ENST00000333496 NUP62P37198 522 aaPredicted RBP11.98□□□□□ -0.49
CLN3-201ENST00000333496 FAM106AQ4KMX7 169 aa11.98□□□□□ -0.49
CLN3-201ENST00000333496 SLC35G3Q8N808 338 aa11.98□□□□□ -0.49
CLN3-201ENST00000333496 PPP1R1CQ8WVI7 109 aa11.98□□□□□ -0.49
CLN3-201ENST00000333496 IL22RA2Q969J5 263 aa11.98□□□□□ -0.49
CLN3-201ENST00000333496 MISP3Q96FF7 219 aa11.98□□□□□ -0.49
CLN3-201ENST00000333496 CHRDL1Q9BU40 450 aa11.98□□□□□ -0.49
CLN3-201ENST00000333496 C21orf62Q9NYP8 219 aa11.98□□□□□ -0.49
CLN3-201ENST00000333496 ZNF320A2RRD8 509 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 TMEM213A2RRL7 107 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 A8MWP6 167 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 ADMP35318 185 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 CD69Q07108 199 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 Q8N1Y9 231 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 INO80EQ8NBZ0 244 aaPredicted RBP11.97□□□□□ -0.49
CLN3-201ENST00000333496 OR1S1Q8NH92 325 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 CACNG8Q8WXS5 425 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 BSCL2Q96G97 398 aaPredicted RBP11.97□□□□□ -0.49
CLN3-201ENST00000333496 ZNF414Q96IQ9 312 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 ATP6V0BQ99437 205 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.97□□□□□ -0.49
CLN3-201ENST00000333496 CACNG5Q9UF02 275 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 SMAD5-AS1Q9Y6J3 95 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms