RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 CEBPDP49716 269 aaPredicted RBP3.9□□□□□ -1.79
PTPN13-201ENST00000316707 ZNF329Q86UD4 541 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 PRSS3P2Q8NHM4 247 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 NEU4Q8WWR8 484 aaPredicted RBP3.9□□□□□ -1.79
PTPN13-201ENST00000316707 TNFRSF14Q92956 283 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 C9orf118A6NHY6 69 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 SHISA9B4DS77 424 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 M0QZ24 198 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 COL8A1P27658 744 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 LOXL3P58215 753 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 MAJINQ3KP22 176 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 TMEM177Q53S58 311 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 FER1L6-AS1Q8NA97 138 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 OR5AN1Q8NGI8 311 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 TMEM167AQ8TBQ9 72 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 SCRT2Q9NQ03 307 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 RPH3ALQ9UNE2 315 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 ATG2BQ96BY7 2078 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 TRBV6-1A0A0K0K1D8 114 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 hADV38S2A0JD32 116 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 MYCNOSP40205 109 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 FABP6P51161 128 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 Q6ZVH6 145 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 OR9G1Q8NH87 305 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 MLST8Q9BVC4 326 aa3.9□□□□□ -1.79
PTPN13-201ENST00000316707 RPUSD1Q9UJJ7 312 aaKnown RBP3.9□□□□□ -1.79
PTPN13-201ENST00000316707 SDK2Q58EX2 2172 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 PINLYPA6NC86 204 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 PGPA6NDG6 321 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 CA1P00915 261 aaPredicted RBP3.89□□□□□ -1.79
PTPN13-201ENST00000316707 TCRAP04437 139 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 CT45A10P0DMU9 189 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 Q0VFX4 171 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 SCGB2A2Q13296 93 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 C3AR1Q16581 482 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 VMA21Q3ZAQ7 101 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 SPINK14Q6IE38 97 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 C12orf49Q9H741 205 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 UTRNP46939 3433 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 UNC13CQ8NB66 2214 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 FBLL1A6NHQ2 334 aaKnown RBP3.89□□□□□ -1.79
PTPN13-201ENST00000316707 IGKV3-15P01624 115 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 LTC4SQ16873 150 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 RPRMLQ8N4K4 120 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 FER1L6-AS2Q96M78 137 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 ZNF747Q9BV97 191 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 SSBP4Q9BWG4 385 aaPredicted RBP3.89□□□□□ -1.79
PTPN13-201ENST00000316707 C7orf69Q9H7B7 122 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 LINC00574Q9H8X3 128 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 SRRM4A7MD48 611 aaKnown RBP3.89□□□□□ -1.79
PTPN13-201ENST00000316707 RPL13AP40429 203 aaKnown RBP3.89□□□□□ -1.79
PTPN13-201ENST00000316707 LGALS7P47929 136 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 PMS2CLQ68D20 193 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 BOD1L2Q8IYS8 172 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 VKORC1L1Q8N0U8 176 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 CD177Q8N6Q3 437 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 TMEM186Q96B77 213 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 CITED2Q99967 270 aaPredicted RBP3.89□□□□□ -1.79
PTPN13-201ENST00000316707 USF3Q68DE3 2245 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 IGHV1-24A0A0C4DH33 117 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 A0A1B0GV72 72 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 CFIP05156 583 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 SAA2P0DJI9 122 aaPredicted RBP3.89□□□□□ -1.79
PTPN13-201ENST00000316707 MBNL2Q5VZF2 373 aaKnown RBP3.89□□□□□ -1.79
PTPN13-201ENST00000316707 FAM222BQ8WU58 562 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 DCTN5Q9BTE1 182 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 TRGV5A0A0B4J1U4 118 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 HAX1O00165 279 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 PSG3Q16557 428 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 LGALS9BQ3B8N2 356 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 LGALS9CQ6DKI2 356 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 UFSP1Q6NVU6 142 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 ZADH2Q8N4Q0 377 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 CT55Q8WUE5 264 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 FAM168AQ92567 244 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 JKAMPQ9P055 326 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 SDK1Q7Z5N4 2213 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 C9orf172C9J069 976 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 MEOX1P50221 254 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 PLP1P60201 277 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 THAP8Q8NA92 274 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 GUCD1Q96NT3 240 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 PLSCR4Q9NRQ2 329 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 CLEC5AQ9NY25 188 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 SPCS1Q9Y6A9 102 aa3.89□□□□□ -1.79
PTPN13-201ENST00000316707 IGKV1OR2-108A0A075B7D4 117 aa3.88□□□□□ -1.79
PTPN13-201ENST00000316707 C19orf71A6NCJ1 209 aa3.88□□□□□ -1.79
PTPN13-201ENST00000316707 CELA3AP09093 270 aa3.88□□□□□ -1.79
PTPN13-201ENST00000316707 NHLH1Q02575 133 aa3.88□□□□□ -1.79
PTPN13-201ENST00000316707 CXorf67Q86X51 503 aaPredicted RBP3.88□□□□□ -1.79
PTPN13-201ENST00000316707 CIARTQ8N365 385 aaPredicted RBP3.88□□□□□ -1.79
PTPN13-201ENST00000316707 PIFOQ8TCI5 191 aa3.88□□□□□ -1.79
PTPN13-201ENST00000316707 FLYWCH2Q96CP2 140 aaKnown RBP3.88□□□□□ -1.79
PTPN13-201ENST00000316707 OTORQ9NRC9 128 aa3.88□□□□□ -1.79
PTPN13-201ENST00000316707 SMPXQ9UHP9 88 aa3.88□□□□□ -1.79
PTPN13-201ENST00000316707 CEP290O15078 2479 aa3.88□□□□□ -1.79
PTPN13-201ENST00000316707 BRWD1Q9NSI6 2320 aa3.88□□□□□ -1.79
PTPN13-201ENST00000316707 SPINK2P20155 84 aa3.88□□□□□ -1.79
PTPN13-201ENST00000316707 MEF2CQ06413 473 aaPredicted RBP3.88□□□□□ -1.79
PTPN13-201ENST00000316707 PLGLAQ15195 96 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms