RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 AMTP48728 403 aa17.82■□□□□ 0.44
SHMT1-201ENST00000316694 SSBP3Q9BWW4 388 aaPredicted RBP17.82■□□□□ 0.44
SHMT1-201ENST00000316694 MRPL32Q9BYC8 188 aaKnown RBP17.82■□□□□ 0.44
SHMT1-201ENST00000316694 ZNF586Q9NXT0 402 aa17.82■□□□□ 0.44
SHMT1-201ENST00000316694 NKX6-3A6NJ46 265 aa17.82■□□□□ 0.44
SHMT1-201ENST00000316694 H0YJW9 148 aa17.82■□□□□ 0.44
SHMT1-201ENST00000316694 ZNF253O75346 499 aa17.82■□□□□ 0.44
SHMT1-201ENST00000316694 COMPP49747 757 aaPredicted RBP17.82■□□□□ 0.44
SHMT1-201ENST00000316694 MIEN1Q9BRT3 115 aa17.82■□□□□ 0.44
SHMT1-201ENST00000316694 RIF1Q5UIP0 2472 aaKnown RBP17.82■□□□□ 0.44
SHMT1-201ENST00000316694 SMIM27A0A1W2PRY6 76 aa17.81■□□□□ 0.44
SHMT1-201ENST00000316694 K7EM74 188 aa17.81■□□□□ 0.44
SHMT1-201ENST00000316694 COX7A2P2O60397 106 aa17.81■□□□□ 0.44
SHMT1-201ENST00000316694 ZNF124Q15973 351 aa17.81■□□□□ 0.44
SHMT1-201ENST00000316694 C10orf55Q5SWW7 151 aa17.81■□□□□ 0.44
SHMT1-201ENST00000316694 TEX36Q5VZQ5 186 aa17.81■□□□□ 0.44
SHMT1-201ENST00000316694 CACNG8Q8WXS5 425 aa17.81■□□□□ 0.44
SHMT1-201ENST00000316694 FLYWCH2Q96CP2 140 aaKnown RBP17.81■□□□□ 0.44
SHMT1-201ENST00000316694 ZNF292O60281 2723 aa17.81■□□□□ 0.44
SHMT1-201ENST00000316694 FAM168AQ92567 244 aa17.81■□□□□ 0.44
SHMT1-201ENST00000316694 PSMB11A5LHX3 300 aa17.8■□□□□ 0.44
SHMT1-201ENST00000316694 OR10J3Q5JRS4 329 aa17.8■□□□□ 0.44
SHMT1-201ENST00000316694 KCNS1Q96KK3 526 aa17.8■□□□□ 0.44
SHMT1-201ENST00000316694 ZNF355PQ9NSJ1 428 aa17.8■□□□□ 0.44
SHMT1-201ENST00000316694 CDC42EP3Q9UKI2 254 aa17.8■□□□□ 0.44
SHMT1-201ENST00000316694 BSNQ9UPA5 3926 aa17.8■□□□□ 0.44
SHMT1-201ENST00000316694 BMPR1BO00238 502 aa17.8■□□□□ 0.44
SHMT1-201ENST00000316694 DIAPH2-AS1Q14236 149 aa17.8■□□□□ 0.44
SHMT1-201ENST00000316694 ZNF714Q96N38 554 aa17.8■□□□□ 0.44
SHMT1-201ENST00000316694 NRN1Q9NPD7 142 aa17.8■□□□□ 0.44
SHMT1-201ENST00000316694 AMMECR1Q9Y4X0 333 aaPredicted RBP17.8■□□□□ 0.44
SHMT1-201ENST00000316694 A0A1W2PS18 150 aa17.79■□□□□ 0.44
SHMT1-201ENST00000316694 HLA-DQA1P01909 254 aa17.79■□□□□ 0.44
SHMT1-201ENST00000316694 WT1-ASQ06250 92 aa17.79■□□□□ 0.44
SHMT1-201ENST00000316694 COX19Q49B96 90 aa17.79■□□□□ 0.44
SHMT1-201ENST00000316694 H1FXQ92522 213 aaKnown RBP17.79■□□□□ 0.44
SHMT1-201ENST00000316694 NPIPB3Q92617 1050 aa17.79■□□□□ 0.44
SHMT1-201ENST00000316694 TRAV34A0A0B4J273 112 aa17.79■□□□□ 0.44
SHMT1-201ENST00000316694 DIRC3C9JPN6 131 aa17.79■□□□□ 0.44
SHMT1-201ENST00000316694 C10orf113Q5VZT2 155 aa17.79■□□□□ 0.44
SHMT1-201ENST00000316694 OR5AN1Q8NGI8 311 aa17.79■□□□□ 0.44
SHMT1-201ENST00000316694 OR10X1Q8NGY0 326 aa17.79■□□□□ 0.44
SHMT1-201ENST00000316694 FNDC4Q9H6D8 234 aaPredicted RBP17.79■□□□□ 0.44
SHMT1-201ENST00000316694 ZNF318Q5VUA4 2279 aa17.79■□□□□ 0.44
SHMT1-201ENST00000316694 USF1P22415 310 aaPredicted RBP17.78■□□□□ 0.44
SHMT1-201ENST00000316694 RNF2Q99496 336 aa17.78■□□□□ 0.44
SHMT1-201ENST00000316694 PAXXQ9BUH6 204 aa17.78■□□□□ 0.44
SHMT1-201ENST00000316694 ADGRG4Q8IZF6 3080 aa17.78■□□□□ 0.44
SHMT1-201ENST00000316694 PLXNB1O43157 2135 aa17.78■□□□□ 0.44
SHMT1-201ENST00000316694 APCSP02743 223 aa17.78■□□□□ 0.44
SHMT1-201ENST00000316694 TNFRSF1AP19438 455 aa17.78■□□□□ 0.44
SHMT1-201ENST00000316694 TMEM177Q53S58 311 aa17.78■□□□□ 0.44
SHMT1-201ENST00000316694 TMEM200BQ69YZ2 307 aa17.78■□□□□ 0.44
SHMT1-201ENST00000316694 ZNF331Q9NQX6 463 aaPredicted RBP17.78■□□□□ 0.44
SHMT1-201ENST00000316694 IZUMO1RA6ND01 250 aa17.77■□□□□ 0.44
SHMT1-201ENST00000316694 PLAUP00749 431 aa17.77■□□□□ 0.44
SHMT1-201ENST00000316694 BATFQ16520 125 aa17.77■□□□□ 0.44
SHMT1-201ENST00000316694 A0A1W2PN81 502 aa17.77■□□□□ 0.43
SHMT1-201ENST00000316694 M0QZK8 103 aa17.77■□□□□ 0.43
SHMT1-201ENST00000316694 ZNF25P17030 456 aaPredicted RBP17.77■□□□□ 0.43
SHMT1-201ENST00000316694 OR4C13Q8NGP0 309 aa17.77■□□□□ 0.43
SHMT1-201ENST00000316694 ZNF430Q9H8G1 570 aaPredicted RBP17.77■□□□□ 0.43
SHMT1-201ENST00000316694 DMXL2Q8TDJ6 3036 aa17.77■□□□□ 0.43
SHMT1-201ENST00000316694 FCN3O75636 299 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 REG1AP05451 166 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 PRR27Q6MZM9 219 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 IGFL3Q6UXB1 125 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 PATE2Q6UY27 113 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 WFDC8Q8IUA0 241 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 FAM19A2Q8N3H0 131 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 GVINP1Q7Z2Y8 2422 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 CGB1A6NKQ9 187 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 A6NNC1 897 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 MEF2CQ06413 473 aaPredicted RBP17.76■□□□□ 0.43
SHMT1-201ENST00000316694 SLAQ13239 276 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 Q6ZS92 163 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 ZNF329Q86UD4 541 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 Q8N976 141 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 TMEM68Q96MH6 324 aa17.76■□□□□ 0.43
SHMT1-201ENST00000316694 PKDREJQ9NTG1 2253 aa17.75■□□□□ 0.43
SHMT1-201ENST00000316694 PCNX1Q96RV3 2341 aa17.75■□□□□ 0.43
SHMT1-201ENST00000316694 ZNF324O75467 553 aaPredicted RBP17.75■□□□□ 0.43
SHMT1-201ENST00000316694 RPLP1P05386 114 aaKnown RBP17.75■□□□□ 0.43
SHMT1-201ENST00000316694 CASP6P55212 293 aa17.75■□□□□ 0.43
SHMT1-201ENST00000316694 TMEM108Q6UXF1 575 aa17.75■□□□□ 0.43
SHMT1-201ENST00000316694 OR1L4Q8NGR5 311 aa17.75■□□□□ 0.43
SHMT1-201ENST00000316694 TMEM167AQ8TBQ9 72 aa17.75■□□□□ 0.43
SHMT1-201ENST00000316694 MRPL36Q9P0J6 103 aaKnown RBP17.75■□□□□ 0.43
SHMT1-201ENST00000316694 DCHS1Q96JQ0 3298 aa17.75■□□□□ 0.43
SHMT1-201ENST00000316694 PEX7O00628 323 aa17.75■□□□□ 0.43
SHMT1-201ENST00000316694 NTF3P20783 257 aa17.75■□□□□ 0.43
SHMT1-201ENST00000316694 BPIFB3P59826 476 aa17.75■□□□□ 0.43
SHMT1-201ENST00000316694 IGF2-ASQ6U949 168 aa17.75■□□□□ 0.43
SHMT1-201ENST00000316694 RBMXL3Q8N7X1 1067 aaKnown RBP17.75■□□□□ 0.43
SHMT1-201ENST00000316694 KALRNO60229 2985 aa17.75■□□□□ 0.43
SHMT1-201ENST00000316694 ZFHX2Q9C0A1 2572 aaPredicted RBP17.75■□□□□ 0.43
SHMT1-201ENST00000316694 TCRBV4S1A1TA0A5B7 111 aa17.74■□□□□ 0.43
SHMT1-201ENST00000316694 C17orf100A8MU93 164 aa17.74■□□□□ 0.43
SHMT1-201ENST00000316694 FOSL1P15407 271 aa17.74■□□□□ 0.43
SHMT1-201ENST00000316694 MFAP2P55001 183 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms