RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 OR5AN1Q8NGI8 311 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 OR9G4Q8NGQ1 327 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 PPBPP02775 128 aa14.47□□□□□ -0.09
SYNPO-201ENST00000307662 ERVK11-1P61568 191 aa14.47□□□□□ -0.09
SYNPO-201ENST00000307662 SFTA2Q6UW10 78 aa14.47□□□□□ -0.09
SYNPO-201ENST00000307662 OR9G9P0C7N8 305 aa14.47□□□□□ -0.09
SYNPO-201ENST00000307662 SRSF1Q07955 248 aaKnown RBP eCLIP14.47□□□□□ -0.09
SYNPO-201ENST00000307662 TMEM256Q8N2U0 113 aa14.47□□□□□ -0.09
SYNPO-201ENST00000307662 VKORC1Q9BQB6 163 aa14.47□□□□□ -0.09
SYNPO-201ENST00000307662 LINC00312Q9Y6C7 94 aa14.47□□□□□ -0.09
SYNPO-201ENST00000307662 IGHV3-49A0A0A0MS15 119 aa14.47□□□□□ -0.09
SYNPO-201ENST00000307662 GAGE13Q4V321 117 aa14.47□□□□□ -0.09
SYNPO-201ENST00000307662 IGKV3-20P01619 116 aa14.47□□□□□ -0.09
SYNPO-201ENST00000307662 C1orf162Q8NEQ5 155 aaPredicted RBP14.47□□□□□ -0.09
SYNPO-201ENST00000307662 IFI27L1Q96BM0 104 aa14.47□□□□□ -0.09
SYNPO-201ENST00000307662 FAM186AA6NE01 2351 aa14.46□□□□□ -0.09
SYNPO-201ENST00000307662 MORN2Q502X0 79 aa14.46□□□□□ -0.09
SYNPO-201ENST00000307662 ZNF664Q8N3J9 261 aa14.46□□□□□ -0.09
SYNPO-201ENST00000307662 ASCL2Q99929 193 aa14.46□□□□□ -0.09
SYNPO-201ENST00000307662 SEMA5BQ9P283 1151 aa14.46□□□□□ -0.09
SYNPO-201ENST00000307662 DPM3Q9P2X0 92 aa14.46□□□□□ -0.09
SYNPO-201ENST00000307662 CD69Q07108 199 aa14.46□□□□□ -0.09
SYNPO-201ENST00000307662 NUDT10Q8NFP7 164 aa14.46□□□□□ -0.09
SYNPO-201ENST00000307662 B9A039 149 aa14.46□□□□□ -0.09
SYNPO-201ENST00000307662 TREML4Q6UXN2 200 aa14.46□□□□□ -0.1
SYNPO-201ENST00000307662 SIGLEC12Q96PQ1 595 aa14.46□□□□□ -0.1
SYNPO-201ENST00000307662 PSG8Q9UQ74 426 aa14.46□□□□□ -0.1
SYNPO-201ENST00000307662 IGHV2OR16-5A0A0B4J2B6 119 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 PRCDQ00LT1 54 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 RASL11AQ6T310 242 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 CRIM1Q9NZV1 1036 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 TRGV3P03979 118 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 LY6EQ16553 131 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 RTN4RL2Q86UN3 420 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 TMEM101Q96IK0 257 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 A8MWV9 139 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 IGKV1D-33P01593 117 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 IGKV1-33P01594 117 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 IGHV4-39P01824 125 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 UBE2V1Q13404 147 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 FGF11Q92914 225 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 PAX1P15863 534 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 ARPC1AQ92747 370 aa14.45□□□□□ -0.1
SYNPO-201ENST00000307662 PVRIGQ6DKI7 326 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 CACNA1IQ9P0X4 2223 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 A0A0G2JMM0 328 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 A0A1W2PPB8 328 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 KIR3DP1A8MWS1 328 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 DUTP33316 252 aaKnown RBP14.44□□□□□ -0.1
SYNPO-201ENST00000307662 NUP37Q8NFH4 326 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 PSME4Q14997 1843 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 TRAV8-4A0A0B4J246 113 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 LYL1P12980 280 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 FAM71F2Q6NXP2 309 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 RPP25LQ8N5L8 163 aaKnown RBP14.44□□□□□ -0.1
SYNPO-201ENST00000307662 DMRTA2Q96SC8 542 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 A0A0G2JLM5 398 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 GGTLC1Q9BX51 225 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 PATJQ8NI35 1801 aa14.44□□□□□ -0.1
SYNPO-201ENST00000307662 UMODP07911 640 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 TDGF1P3P51864 188 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 FAM166AQ6J272 317 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 CHTOPQ9Y3Y2 248 aaKnown RBP14.43□□□□□ -0.1
SYNPO-201ENST00000307662 AHCTF1Q8WYP5 2266 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 CEP290O15078 2479 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 IGKV1-12A0A0C4DH73 117 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 C9orf172C9J069 976 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 IGKV1D-12P01611 117 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 ATP1A1-AS1Q5TC04 95 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 SMPXQ9UHP9 88 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 MRPS18CQ9Y3D5 142 aaKnown RBP14.43□□□□□ -0.1
SYNPO-201ENST00000307662 NMSQ5H8A3 153 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 TET1Q8NFU7 2136 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 UCNP55089 124 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 ORMDL2Q53FV1 153 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 LCTP09848 1927 aa14.43□□□□□ -0.1
SYNPO-201ENST00000307662 ZNF815PA8K554 130 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 CELA3BP08861 270 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 SP9P0CG40 484 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 RNASE4P34096 147 aaKnown RBP14.42□□□□□ -0.1
SYNPO-201ENST00000307662 CKS1BP61024 79 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 HGFACQ04756 655 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 IGLV3-32A0A0A0MS00 114 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 C3orf79P0CE67 100 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 IGHV1-2P23083 117 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 PAX2Q02962 417 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 PPP1R27Q86WC6 154 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 CYSLTR1Q9Y271 337 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 LTBP1Q14766 1721 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 SCN2AQ99250 2005 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 RNF125Q96EQ8 232 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 RFNGQ9Y644 331 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 FLVCR1-AS1Q8TAF5 88 aa14.42□□□□□ -0.1
SYNPO-201ENST00000307662 JMJD8Q96S16 334 aa14.41□□□□□ -0.1
SYNPO-201ENST00000307662 SLC50A1Q9BRV3 221 aa14.41□□□□□ -0.1
SYNPO-201ENST00000307662 TPRP12270 2363 aaKnown RBP14.41□□□□□ -0.1
SYNPO-201ENST00000307662 TRBV7-9A0A0J9YWB2 115 aa14.41□□□□□ -0.1
SYNPO-201ENST00000307662 LINC01559Q495D7 138 aa14.41□□□□□ -0.1
SYNPO-201ENST00000307662 LY96Q9Y6Y9 160 aa14.41□□□□□ -0.1
SYNPO-201ENST00000307662 CRYGSP22914 178 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 195.5 ms