RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 FOXE3Q13461 319 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 LINC00305Q7Z4B0 112 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 PRR19A6NJB7 356 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 CAMPP49913 170 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 ZNF114Q8NC26 417 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 ANKHD1Q8IWZ3 2542 aaKnown RBP3.37□□□□□ -1.87
USH2A-201ENST00000307340 NKX2-6A6NCS4 301 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 DPM2O94777 84 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 PF4P02776 101 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 SELLP14151 372 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 CDAP32320 146 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 RPL15P61313 204 aaKnown RBP3.37□□□□□ -1.87
USH2A-201ENST00000307340 PYY3Q5JQD4 70 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 PPIAL4CA0A0B4J2A2 164 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 H3BSH0 61 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 PAGE4O60829 102 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 PPIAL4GP0DN37 164 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 COL9A1P20849 921 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 ACTL10Q5JWF8 245 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 GUSBP11Q6P575 273 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 NRN1Q9NPD7 142 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 ZNF48Q96MX3 618 aaPredicted RBP3.37□□□□□ -1.87
USH2A-201ENST00000307340 TMEM14BQ9NUH8 114 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 MRPL16Q9NX20 251 aaKnown RBP3.37□□□□□ -1.87
USH2A-201ENST00000307340 IAPPP10997 89 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 FAM90A2PQ658T7 463 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 TMEM14EPQ6UXP3 125 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 TNCP24821 2201 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 ZNF688P0C7X2 276 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 COL10A1Q03692 680 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 MORN2Q502X0 79 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 OR5AN1Q8NGI8 311 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 DLX4Q92988 240 aaPredicted RBP3.37□□□□□ -1.87
USH2A-201ENST00000307340 NBR2O15453 112 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 WFDC8Q8IUA0 241 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 SLC25A15Q9Y619 301 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 APOMO95445 188 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 RNASE6Q93091 150 aaKnown RBP3.37□□□□□ -1.87
USH2A-201ENST00000307340 GTSCR1Q86UQ5 136 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 VKORC1L1Q8N0U8 176 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 LINC00311Q8N616 119 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 LILRA3Q8N6C8 439 aaPredicted RBP3.37□□□□□ -1.87
USH2A-201ENST00000307340 CREBBPQ92793 2442 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 CNTFRP26992 372 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 ZNF83P51522 516 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 GVQW1Q8N7I0 195 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 IGHV1-69DA0A0B4J2H0 117 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 GCHFRP30047 84 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 LAGE3Q14657 143 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 TMEM256Q8N2U0 113 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 C20orf144Q9BQM9 153 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 CCL28Q9NRJ3 127 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 PCNX3Q9H6A9 2034 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 TCF21O43680 179 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 LYZP61626 148 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 COLCA1Q6ZS62 124 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 PLEKHB2Q96CS7 222 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 LINC00052Q96N35 136 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 SP6Q3SY56 376 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 ABHD12Q8N2K0 398 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 ABHD17AQ96GS6 310 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 C20orf78Q9BR46 151 aa3.37□□□□□ -1.87
USH2A-201ENST00000307340 LOC105371242A0A075B767 164 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 F5H697 171 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 ADIPOQQ15848 244 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 CCL4L1Q8NHW4 92 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 MCRIP2Q9BUT9 160 aaKnown RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 A8MWV9 139 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 CEACAM4O75871 244 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 GPX1P07203 203 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 TIMM8BQ9Y5J9 83 aaPredicted RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 A0A096LPE4 126 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 A0A1W2PPZ6 126 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 STATHP02808 62 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 ZFP36L1Q07352 338 aaKnown RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 COA6Q5JTJ3 125 aaKnown RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 RNF167Q9H6Y7 350 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 IER3P46695 156 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 CD69Q07108 199 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 TEX38Q6PEX7 206 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 RNF166Q96A37 237 aaPredicted RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 FAM60AQ9NP50 221 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 NTN3O00634 580 aaPredicted RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 SUPT4H1P63272 117 aaKnown RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 ZNF750Q32MQ0 723 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 DCAF12L2Q5VW00 463 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 TMEM92Q6UXU6 159 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 OR10S1Q8NGN2 331 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 DSCAML1Q8TD84 2053 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 SPRY3O43610 288 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 TOMM40O96008 361 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 ZNF250P15622 560 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 Q8TCH9 128 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 EAF1Q96JC9 268 aaPredicted RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 MBD3L4A6NDZ8 208 aaPredicted RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 MBD3L3A6NE82 208 aaPredicted RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 MBD3L5A6NJ08 208 aaPredicted RBP3.36□□□□□ -1.87
USH2A-201ENST00000307340 PRSS2P07478 247 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 LTBRP36941 435 aa3.36□□□□□ -1.87
USH2A-201ENST00000307340 MBD3L2Q8NHZ7 208 aaPredicted RBP3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms