RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 IGKV1OR2-108A0A075B7D4 117 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 TMEM249Q2WGJ8 235 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 KLF17Q5JT82 389 aaPredicted RBP14.38□□□□□ -0.11
VIM-201ENST00000224237 OR2T6Q8NHC8 308 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 FAM103A1Q9BTL3 118 aaKnown RBP14.38□□□□□ -0.11
VIM-201ENST00000224237 SCRT1Q9BWW7 348 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 SOX21Q9Y651 276 aaPredicted RBP14.38□□□□□ -0.11
VIM-201ENST00000224237 YIF1AO95070 293 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 FBP1P09467 338 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 IGHV4-31P0DP07 118 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 DEFA4P12838 97 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 CDC34P49427 236 aaPredicted RBP14.38□□□□□ -0.11
VIM-201ENST00000224237 PRR20EP86478 221 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 PRR20CP86479 221 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 PRR20DP86480 221 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 PRR20BP86481 221 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 PRR20AP86496 221 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 FAM122CQ6P4D5 195 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 C19orf35Q6ZS72 473 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 C22orf15Q8WYQ4 148 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 WNT10AQ9GZT5 417 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 SLC45A2Q9UMX9 530 aa14.38□□□□□ -0.11
VIM-201ENST00000224237 ITPR3Q14573 2671 aa14.37□□□□□ -0.11
VIM-201ENST00000224237 LOC105371267A0A1B0GV96 52 aa14.37□□□□□ -0.11
VIM-201ENST00000224237 SEC14L6B5MCN3 397 aa14.37□□□□□ -0.11
VIM-201ENST00000224237 CRYGCP07315 174 aa14.37□□□□□ -0.11
VIM-201ENST00000224237 NDPQ00604 133 aa14.37□□□□□ -0.11
VIM-201ENST00000224237 ZFHX3Q15911 3703 aa14.37□□□□□ -0.11
VIM-201ENST00000224237 IGHV7-81A0A0B4J1V7 117 aa14.36□□□□□ -0.11
VIM-201ENST00000224237 C9JQL5 133 aa14.36□□□□□ -0.11
VIM-201ENST00000224237 NUPL2O15504 423 aaKnown RBP14.36□□□□□ -0.11
VIM-201ENST00000224237 OR10J1P30954 320 aa14.36□□□□□ -0.11
VIM-201ENST00000224237 FGF8P55075 233 aaPredicted RBP14.36□□□□□ -0.11
VIM-201ENST00000224237 BPIFB3P59826 476 aa14.36□□□□□ -0.11
VIM-201ENST00000224237 GCSAMLQ5JQS6 135 aa14.36□□□□□ -0.11
VIM-201ENST00000224237 RAB24Q969Q5 203 aa14.36□□□□□ -0.11
VIM-201ENST00000224237 RBM14Q96PK6 669 aaKnown RBP14.36□□□□□ -0.11
VIM-201ENST00000224237 SSX3Q99909 188 aa14.36□□□□□ -0.11
VIM-201ENST00000224237 CSPG4Q6UVK1 2322 aa14.36□□□□□ -0.11
VIM-201ENST00000224237 A0A1W2PPV4 95 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 RBFOX3A6NFN3 312 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 NPIPB5A8MRT5 1133 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 THAP8Q8NA92 274 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 NPIPB3Q92617 1050 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 SLC25A33Q9BSK2 321 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 MOB4Q9Y3A3 225 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 DMRT1Q9Y5R6 373 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 FAM74A7A6NL05 159 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 MT-CO2P00403 227 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 RND2P52198 227 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 FAM74A3Q4VXF1 159 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 TMEM116Q8NCL8 245 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 WFDC11Q8NEX6 87 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 PIFOQ8TCI5 191 aa14.35□□□□□ -0.11
VIM-201ENST00000224237 ZNF469Q96JG9 3925 aaPredicted RBP14.34□□□□□ -0.11
VIM-201ENST00000224237 ASPHD1Q5U4P2 390 aa14.34□□□□□ -0.11
VIM-201ENST00000224237 CYP2G1PQ6ZSU1 146 aa14.34□□□□□ -0.11
VIM-201ENST00000224237 TTC9CQ8N5M4 171 aa14.34□□□□□ -0.11
VIM-201ENST00000224237 C5orf56Q8N8D9 126 aa14.34□□□□□ -0.11
VIM-201ENST00000224237 TCRBV4S1A1TA0A5B7 111 aa14.33□□□□□ -0.11
VIM-201ENST00000224237 ZFP92A6NM28 416 aa14.33□□□□□ -0.11
VIM-201ENST00000224237 HMGB3O15347 200 aaKnown RBP14.33□□□□□ -0.11
VIM-201ENST00000224237 IGHV3-48P01763 117 aa14.33□□□□□ -0.11
VIM-201ENST00000224237 LINC00869P0C866 280 aa14.33□□□□□ -0.11
VIM-201ENST00000224237 ATF4P18848 351 aaPredicted RBP14.33□□□□□ -0.11
VIM-201ENST00000224237 PMS2P11Q13670 270 aa14.33□□□□□ -0.11
VIM-201ENST00000224237 HAGHQ16775 308 aa14.33□□□□□ -0.11
VIM-201ENST00000224237 HSPB9Q9BQS6 159 aa14.33□□□□□ -0.11
VIM-201ENST00000224237 MRPL36Q9P0J6 103 aaKnown RBP14.33□□□□□ -0.11
VIM-201ENST00000224237 GNG13Q9P2W3 67 aa14.33□□□□□ -0.11
VIM-201ENST00000224237 I3L2K1 104 aa14.33□□□□□ -0.12
VIM-201ENST00000224237 EIF3GO75821 320 aaKnown RBP eCLIP14.33□□□□□ -0.12
VIM-201ENST00000224237 IFNA1P01562 189 aa14.33□□□□□ -0.12
VIM-201ENST00000224237 PPT1P50897 306 aa14.33□□□□□ -0.12
VIM-201ENST00000224237 ZNF506Q5JVG8 444 aa14.33□□□□□ -0.12
VIM-201ENST00000224237 CLRN3Q8NCR9 226 aa14.33□□□□□ -0.12
VIM-201ENST00000224237 RARRES2Q99969 163 aa14.33□□□□□ -0.12
VIM-201ENST00000224237 SLC35B3Q9H1N7 401 aa14.33□□□□□ -0.12
VIM-201ENST00000224237 IGKV1D-37A0A075B6S9 117 aa14.32□□□□□ -0.12
VIM-201ENST00000224237 NPBWR1P48145 328 aa14.32□□□□□ -0.12
VIM-201ENST00000224237 SELENOTP62341 195 aa14.32□□□□□ -0.12
VIM-201ENST00000224237 RHOBP62745 196 aa14.32□□□□□ -0.12
VIM-201ENST00000224237 KHDC3LQ587J8 217 aa14.32□□□□□ -0.12
VIM-201ENST00000224237 TMEM219Q86XT9 240 aa14.32□□□□□ -0.12
VIM-201ENST00000224237 CIARTQ8N365 385 aaPredicted RBP14.32□□□□□ -0.12
VIM-201ENST00000224237 SGMS2Q8NHU3 365 aa14.32□□□□□ -0.12
VIM-201ENST00000224237 BCL2P10415 239 aa14.31□□□□□ -0.12
VIM-201ENST00000224237 EGR2P11161 476 aaPredicted RBP14.31□□□□□ -0.12
VIM-201ENST00000224237 TRGV9Q99603 122 aa14.31□□□□□ -0.12
VIM-201ENST00000224237 C19orf24Q9BVV8 132 aa14.31□□□□□ -0.12
VIM-201ENST00000224237 PITPNC1Q9UKF7 332 aa14.31□□□□□ -0.12
VIM-201ENST00000224237 TEX15Q9BXT5 2789 aa14.31□□□□□ -0.12
VIM-201ENST00000224237 IGHV3-21A0A0B4J1V1 117 aa14.31□□□□□ -0.12
VIM-201ENST00000224237 LOC102723971A0A1B0GUV8 181 aa14.31□□□□□ -0.12
VIM-201ENST00000224237 H3BUX3 64 aa14.31□□□□□ -0.12
VIM-201ENST00000224237 HSPB1P04792 205 aaKnown RBP14.31□□□□□ -0.12
VIM-201ENST00000224237 GATA2P23769 480 aaPredicted RBP14.31□□□□□ -0.12
VIM-201ENST00000224237 ICAM4Q14773 271 aa14.31□□□□□ -0.12
VIM-201ENST00000224237 RBMS3Q6XE24 437 aaKnown RBP14.31□□□□□ -0.12
VIM-201ENST00000224237 TNFRSF19Q9NS68 423 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms